DRSC/TRiP Functional Genomics Resources

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Protein Alignment SerT and Slc6a21

DIOPT Version :9

Sequence 1:NP_001369117.1 Gene:SerT / 37895 FlyBaseID:FBgn0010414 Length:768 Species:Drosophila melanogaster
Sequence 2:XP_006541333.1 Gene:Slc6a21 / 76713 MGIID:1923963 Length:749 Species:Mus musculus


Alignment Length:652 Identity:170/652 - (26%)
Similarity:296/652 - (45%) Gaps:127/652 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 DDSNED---------DGDHTTPAKVTDPLAPKLANNERILVVSVTERTRETWGQKAEFLLAVIGF 90
            |.|.||         :..||...|..:|.:  ::...|...|.||:.......:|.|.:|.::.|
Mouse     2 DQSFEDFLELKNKPVEEVHTASKKSDNPTS--VSRGFRTREVRVTKIPNHFQAKKTENILILVAF 64

  Fly    91 AVDLGNVWRFPYICYQNGGGAFLVPYCLFLIFGGLPLFYMELALGQFHRCGCLSIWKRICPALKG 155
            ::.||:.|||||:|:|||||:||:.|.:.|:..|:||.|||:.:||:.|...:..||.:.|.|.|
Mouse    65 SIGLGSTWRFPYLCHQNGGGSFLLMYFILLLLLGIPLMYMEMVIGQWLRMDNIQAWKYLVPWLSG 129

  Fly   156 VGYAICLIDIYMGMYYNTIIGWAVYYLFASFTSKLPWTSCDNPWNTENCMQVTSENFTELATSPA 220
            |||:..|..:.:.:|.:.::.|:::||..||...|||.:|.   ..||...|...  |.|.:.|.
Mouse   130 VGYSNILACVLVVLYNSALVSWSLFYLGQSFDYPLPWQNCP---LVENLSMVAGN--TCLWSEPH 189

  Fly   221 KEFFERKVLE--SYKGNGLDFMGPVKPTLALCVFGVFVLVYFSLWKGVRSAGKVVWVTALAPYVV 283
            :.|:...:|:  :....|::.:   ...:.||:|..::.:|.::...::.:..::..:.|...|:
Mouse   190 QYFWYHTLLQASNQMEEGIEVL---VLNVTLCLFATWIFLYVTMVTRIKISVLMMIFSILFSNVL 251

  Fly   284 LIILLVRGVSLPGADEGIKYYL-TPEWHKLKNSKVWIDAASQIFFSLGPGFGTLLALSSYNKFNN 347
            |:...:|.:.|.|:.....:.| |.|...|.:...|..|...:.:|||.|.||::..|:|.....
Mouse   252 LLCFFIRTLFLNGSVRASLWRLVTIELSILSSLDAWRQAGGHVLYSLGLGMGTIITFSTYQPRGE 316

  Fly   348 NCYRDALITSSINCLTSFLAGFVIFSVLG------------------------------------ 376
            |..:.|...:.:|..||.|:.||||.|:|                                    
Mouse   317 NYIKWASFVAMVNLATSLLSSFVIFLVMGFWTTTSGTMCIKRSVSNLINLIANGVLPKAAWPPGD 381

  Fly   377 --------YMAY----------------------VQKTSIDKVGLEGPGLVFIVYPEAIATMSGS 411
                    |:|:                      :||..|    :|||||.::.:.:||:...||
Mouse   382 IIHKPPLEYLAWINQLPNNLKSQVIHQTLPCSILIQKEKI----MEGPGLSYVAFSQAISLFPGS 442

  Fly   412 VFWSIIFFLMLITLGLDSTFGGLEAMITAL------CDEYPRVIGRRRELFVLL--LLAFIFLCA 468
            .||:||||:.|..:||.:....||.::..|      ..::|.::    ::.|.|  .|..:...:
Mouse   443 SFWAIIFFMSLAIMGLGTMLTLLEGIVLPLQKSISTFAKHPNLV----QVLVCLGGFLGSLVFSS 503

  Fly   469 LPTMTYGGVVLVNFLNVYGPGLAILFVVFVEAAGVFWFYGVDRFSSDVEQMLGSKPGLFW---RI 530
            .|    |..|:..|.::..| :.::.:|.::...:.|.||:.||.::|...|||   |.|   ..
Mouse   504 RP----GSYVVFLFDDLLVP-MVLIIIVVIQNLSLAWLYGIKRFRAEVFGQLGS---LVWSPFTF 560

  Fly   531 CWTYIS-P--VFLLTIFIFSI--------MGYKEMLGEEYYYPDWSYQVGWAVTCSSVLCIPMYI 584
            .|:|:: |  :.||||:..::        :.:.:.:..|...|.....:|| ||..|||.:...:
Mouse   561 LWSYVTLPTLLVLLTIYFLNLYYSGSPYYVSWNDSMSHEVKQPYKKIPLGW-VTFLSVLALLPIL 624

  Fly   585 IY 586
            :|
Mouse   625 VY 626

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SerTNP_001369117.1 SLC6sbd_SERT-like 74..607 CDD:271388 158/604 (26%)
Slc6a21XP_006541333.1 SLC5-6-like_sbd 48..622 CDD:382020 157/598 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D250396at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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