DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SerT and slc6a16b

DIOPT Version :9

Sequence 1:NP_001369117.1 Gene:SerT / 37895 FlyBaseID:FBgn0010414 Length:768 Species:Drosophila melanogaster
Sequence 2:NP_001103944.1 Gene:slc6a16b / 567809 ZFINID:ZDB-GENE-070424-95 Length:676 Species:Danio rerio


Alignment Length:719 Identity:218/719 - (30%)
Similarity:339/719 - (47%) Gaps:149/719 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    71 ERTRETWGQKAEFLLAVIGFAVDLGNVWRFPYICYQNGGGAFLVPYCLFLIFGGLPLFYMELALG 135
            |..|:.|..|.|:.||.:||:|.|||||||||:|:|||||||::.|.:.:...|:|||::|||.|
Zfish    30 ETARDGWDSKVEYFLAQVGFSVGLGNVWRFPYLCHQNGGGAFILLYVVLMALVGVPLFFLELAAG 94

  Fly   136 QFHRCGCLSIWKRICPALKGVGYAICLIDIYMGMYYNTIIGWAVYYLFASFTSKLPWTSCDNPWN 200
            |..|.|.:.:|:.|.|.|.|:||:.|::..::.:|||.||||:::||..||...|||..|....|
Zfish    95 QSIRQGSIGVWRHISPKLVGIGYSSCVVCFFVALYYNVIIGWSIFYLGNSFQYPLPWEKCPTEGN 159

  Fly   201 T--ENCMQVTSENFTELATSPAKEFFERKVLESYKGNGLDFMGPVKPTLALCVFGVFVLVYFSLW 263
            :  :.|          .|:||...|:.||.|:.  .:.:|..|.....|..|:...:|:|..:::
Zfish   160 STVKEC----------AASSPTAYFWYRKALDI--TDSIDETGEFNFILTGCLLAAWVIVCLAMY 212

  Fly   264 KGVRSAGKVVWVTALAPYVVLIILLVRGVSLPGADEGIKYYLTPEWHKLKNSKVWIDAASQIFFS 328
            ||::|:|||::.:::.|||||:..|:|||:|.||.||||:...|......:.:||..||:|:||:
Zfish   213 KGIKSSGKVMYFSSVFPYVVLLCFLIRGVTLDGASEGIKFMFYPRLEIWADVQVWRQAATQVFFA 277

  Fly   329 LGPGFGTLLALSSYNKFNNNCYRDALITSSINCLTSFLAGFVIFSVLGYMAY------------- 380
            ||.|||:::|.||||..||||:|||...|.:|.:||.||..|:|:|||:.|.             
Zfish   278 LGLGFGSVIAYSSYNPRNNNCHRDAFTVSGVNFMTSVLATLVVFAVLGFRAKTIAAECVKRNLKA 342

  Fly   381 -------------------VQKTSID-----------------------------KVGLEGPGLV 397
                               |:..|:|                             :.|:|..||.
Zfish   343 LLKVTSSAPLPVLSINASDVESISLDEYANWYSTQGMELSISDYNITACSLEDELRQGVEETGLA 407

  Fly   398 FIVYPEAIATMSGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPRVIGRRRELFVLLLLA 462
            ||.:.||:....||.|||.:|||||:.|||.:.||.:..::|.|.|.: :.:...:.:|.:....
Zfish   408 FIAFTEAMTLFPGSPFWSALFFLMLLNLGLSTMFGTMAGILTPLTDTF-KTLRNHKLIFTICSCT 471

  Fly   463 FIFLCALPTMTYGGVVLVNFLNVYGPGLAILFVVFVEAAGVFWFYGVDRFSSDVEQMLGSKPGLF 527
            ..|:..|......|...|...:.|...|.::.||..:...|.|.||.|||..|::|||.....:.
Zfish   472 VGFVIGLVFTQRCGNYFVTMFDDYSATLPLIIVVIFQTISVSWVYGADRFLEDLKQMLNRPVPVI 536

  Fly   528 WRICWTYISPVFLLTIFIFSIMGYKEMLGEEYY--------------YPDWSYQVGWAVTCSSVL 578
            ::..|.::.|:.:|.:...|::  |.:|....|              ||||:..|...:...:.|
Zfish   537 YKYLWKFVCPIAMLGLLGASLL--KMILKRPEYSAWNREKASKEDLPYPDWALAVLIILIIIASL 599

  Fly   579 CIPMYIIYKFFFASKGGCRQRLQESFQPEDNCGSVVPGQQGTSVXHDHAQVHVNIRTSCTSIKIY 643
            .:|:..|:....       :||.:|  |.|......|                            
Zfish   600 PVPIGYIHSLLL-------ERLGQS--PADTEARYTP---------------------------- 627

  Fly   644 NLNCSSNSNSLSPTTSGAEGRSCYSTNLNCNHSCPSEDQYRSRNHQQQQQQHHHHHHHQHQHRIS 708
               |::....|:|.::                ..||.|...| :|...:..|:.|..:.|...:.
Zfish   628 ---CATTDTDLTPLST----------------LPPSRDDLNS-SHPLLEGNHNSHLQNGHIESVE 672

  Fly   709 SDII 712
            |.::
Zfish   673 SSVL 676

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SerTNP_001369117.1 SLC6sbd_SERT-like 74..607 CDD:271388 202/609 (33%)
slc6a16bNP_001103944.1 SLC6sbd-B0AT-like 33..607 CDD:271364 198/588 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.