DRSC/TRiP Functional Genomics Resources

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Protein Alignment SerT and slc6a8

DIOPT Version :9

Sequence 1:NP_001369117.1 Gene:SerT / 37895 FlyBaseID:FBgn0010414 Length:768 Species:Drosophila melanogaster
Sequence 2:NP_001314797.1 Gene:slc6a8 / 567544 ZFINID:ZDB-GENE-071024-2 Length:652 Species:Danio rerio


Alignment Length:571 Identity:256/571 - (44%)
Similarity:361/571 - (63%) Gaps:38/571 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    67 VSVTER------TRETWGQKAEFLLAVIGFAVDLGNVWRFPYICYQNGGGAFLVPYCLFLIFGGL 125
            :|..|:      .||||.::.:|:::.:||||.|||||||||:||:||||.||:||.||:..||:
Zfish    51 ISAVEKKREGYPERETWTRQMDFIMSCVGFAVGLGNVWRFPYLCYKNGGGVFLIPYVLFIFLGGI 115

  Fly   126 PLFYMELALGQFHRCGCLSIWKRICPALKGVGYAICLIDIYMGMYYNTIIGWAVYYLFASFTSKL 190
            |:|::|:|||||.:.|.:::| .|.|..||:|||..:|..:...||..::.|..||...||.:.|
Zfish   116 PIFFLEIALGQFMKAGSINVW-NIAPLFKGLGYASMVIVFFCNTYYIMVLAWGFYYFIKSFNATL 179

  Fly   191 PWTSCDNPWNTENCMQV--------------TSENFT--ELAT--SPAKEFFERKVLESYKGNGL 237
            ||::||||||||||:::              |..|.|  |||.  ||..||:|.|||..  .:||
Zfish   180 PWSTCDNPWNTENCIEIFRQGDCKNGTIGNSTFGNLTCEELANGRSPIIEFWENKVLNI--SDGL 242

  Fly   238 DFMGPVKPTLALCVFGVFVLVYFSLWKGVRSAGKVVWVTALAPYVVLIILLVRGVSLPGADEGIK 302
            |..|.|...|.||:..|:|:|||.:||||:|.||:|:.||..|||||||||||||:||||.:||.
Zfish   243 DEPGAVNWELMLCLLAVWVMVYFCVWKGVKSTGKIVYFTATFPYVVLIILLVRGVTLPGAYDGIL 307

  Fly   303 YYLTPEWHKLKNSKVWIDAASQIFFSLGPGFGTLLALSSYNKFNNNCYRDALITSSINCLTSFLA 367
            ||:.|:|.||..::|||||.:|||||...|.|.|.||.|||:|||:||:||.:.:.||..|||.|
Zfish   308 YYVKPDWSKLGEAQVWIDAGTQIFFSYAIGLGALTALGSYNRFNNDCYKDAFVLALINSGTSFFA 372

  Fly   368 GFVIFSVLGYMAYVQKTSIDKVGLEGPGLVFIVYPEAIATMSGSVFWSIIFFLMLITLGLDSTFG 432
            |||:||:||:||..|...|.||...||||.||.||:|::.|..:..|:.:||:||:.|||||.|.
Zfish   373 GFVVFSILGFMASEQGVDISKVAESGPGLAFIAYPKAVSMMPVAPVWAALFFIMLLLLGLDSQFV 437

  Fly   433 GLEAMITALCDEYPRVIGR-----RRELFVLLLLAFIFLCALPTMTYGGVVLVNFLNVY-GPGLA 491
            |:|..:|.:.|.:|   |:     :||:.|.:.....|:..|..:|.||:.:....:.| ..|:.
Zfish   438 GVEGFVTGILDLFP---GKYYMRYQREIAVAICCLLCFIIDLSMVTQGGMYVFQLFDYYSASGMT 499

  Fly   492 ILFVVFVEAAGVFWFYGVDRFSSDVEQMLGSKPGLFWRICWTYISPVFLLTIFIFSIMGYKEM-L 555
            :|:..|.|...|.|.||.|||..|:.:|:|.:|..:.:.||:.|:|...:.||:|.::.||.: .
Zfish   500 LLWQAFWECVVVAWVYGADRFMDDIARMIGYRPFPWMKWCWSIITPCVCMGIFLFHLLNYKPLTY 564

  Fly   556 GEEYYYPDWSYQVGWAVTCSSVLCIPMYIIYKFFFASKGGCRQRLQESFQP 606
            ...|.||.|...:||.:..||:||||:.::|| ...:||..::|.:...:|
Zfish   565 NNVYVYPWWGEVIGWCLALSSMLCIPVSLVYK-LSGAKGTFKERWENLTKP 614

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SerTNP_001369117.1 SLC6sbd_SERT-like 74..607 CDD:271388 254/558 (46%)
slc6a8NP_001314797.1 SLC6sbd_CT1 64..652 CDD:271397 254/558 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53371
OrthoDB 1 1.010 - - D250396at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.830

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