DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SerT and slc6a7

DIOPT Version :9

Sequence 1:NP_001369117.1 Gene:SerT / 37895 FlyBaseID:FBgn0010414 Length:768 Species:Drosophila melanogaster
Sequence 2:XP_005161359.1 Gene:slc6a7 / 562050 ZFINID:ZDB-GENE-070112-1492 Length:652 Species:Danio rerio


Alignment Length:691 Identity:258/691 - (37%)
Similarity:382/691 - (55%) Gaps:73/691 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 AGAAATTGRSNPAPWSDDKESPNNEDDSNEDDGDHTTPAKVTDPLAPKLANNERILVVSVTERTR 74
            :.|...|..:..||.:....:|:.|:.::::....:..|..:.|  |..|.:      ...:..|
Zfish    15 SAAEMPTEEARTAPGNGVITTPSTENPAHQNGAVSSPVASQSQP--PSSAAS------PPAQPPR 71

  Fly    75 ETWGQKAEFLLAVIGFAVDLGNVWRFPYICYQNGGGAFLVPYCLFLIFGGLPLFYMELALGQFHR 139
            :.||.|.||||:.||:.|.|||||||||:||:||||.||:||.:.|.|.|:|||.|||:|||:..
Zfish    72 DQWGGKYEFLLSCIGYCVGLGNVWRFPYLCYRNGGGVFLIPYFIMLFFTGMPLFLMELSLGQYGA 136

  Fly   140 CGCLSIWKRICPALKGVGYAICLIDIYMGMYYNTIIGWAVYYLFASFTSKLPWTSCDNPWNTENC 204
            .|.:::|| .||.|||:|..:..:...:.:|||.||.|..|||.:||.|.||| |||...|...|
Zfish   137 AGPITVWK-CCPLLKGIGIGMLCVSTLVCLYYNVIIAWTFYYLGSSFQSPLPW-SCDALQNIALC 199

  Fly   205 MQVTSENFTELATSPAKEFFERKVLESYKGNGLDFMGPVKPTLALCVFGVFVLVYFSLWKGVRSA 269
                 .|.|....||::.|:..|||......||...|||:..||||:...:::::..:.||:.|:
Zfish   200 -----ANKTNSTQSPSEVFWNEKVLGVVHSTGLSDPGPVRWPLALCLLAAWIIIFLCMLKGIHSS 259

  Fly   270 GKVVWVTALAPYVVLIILLVRGVSLPGADEGIKYYLTPEWHKLKNSKVWIDAASQIFFSLGPGFG 334
            ||||:|||..||.||::|::||.:|.|:.:|:.:||||:|.:|.:::||.|||||||:|||.|.|
Zfish   260 GKVVYVTATFPYFVLLVLIIRGATLEGSLDGVAFYLTPKWDQLADAQVWNDAASQIFYSLGIGVG 324

  Fly   335 TLLALSSYNKFNNNCYRDALITSSINCLTSFLAGFVIFSVLGYMAYVQKTSIDKVGLEGPGLVFI 399
            .||:::|||||:||..||.:|.:..||.|||.|||.|||:||:||:.:...:|||...||||.|:
Zfish   325 GLLSMASYNKFDNNVIRDTIIITIGNCSTSFFAGFAIFSILGHMAFKKGVPVDKVADSGPGLAFV 389

  Fly   400 VYPEAIATMSGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPRVIG--RRRELFVLLLLA 462
            .||||:|.:.|||||||:|||||..||:|:.||.:|.:.||:.||:|::..  :.:.||:.:|..
Zfish   390 AYPEALALLPGSVFWSILFFLMLFMLGVDTLFGNMEGICTAVLDEFPQLRSNLKHKTLFLAVLCF 454

  Fly   463 FIFLCALPTMTYGGVVLVNFLNVYGPGLAILFVVFVEAAGVFWFYGVDRFSSDVEQMLGSKPG-- 525
            ..:|..|..:|.||:.....::.:.....::.:......|:.:||||::|..|:..|:...|.  
Zfish   455 SFYLMGLLLITDGGIYWFTLIDSFSTSFGLIIITLFMCIGISFFYGVNQFCQDIVDMICRCPPWC 519

  Fly   526 ----LFWRICWTYISPVFLLTI---FIFSIMGYKEMLGEEYYYPDWSYQVGWAVTCSSVLCIPMY 583
                |:::.||...:| ||||.   :||..|....:....|.||.|...:|   .|...||....
Zfish   520 TKMLLYFKACWVVFTP-FLLTFILTYIFIEMYRTSLRYGSYVYPIWGKALG---VCMGALCCLQI 580

  Fly   584 IIYKFFFASK--GGCRQRLQESFQPEDNCGSVVPGQQGTSVXHDHAQVHVNIRTSCTSIKIYNLN 646
            :|:.....||  |..:.|.::|.:|                              ..|.::.|:|
Zfish   581 LIWAIVAISKESGTLKDRFKKSIRP------------------------------LNSWRVNNIN 615

  Fly   647 CSSNSNSLSPTTSGAEGRSCYSTNLNCNHSCPSEDQYRSRN 687
            .||....:.|.|  .||.  ::.||       :|..|...|
Zfish   616 SSSQEQHVEPHT--IEGP--FTVNL-------TEADYTGMN 645

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SerTNP_001369117.1 SLC6sbd_SERT-like 74..607 CDD:271388 233/545 (43%)
slc6a7XP_005161359.1 SLC5-6-like_sbd 71..610 CDD:294310 235/579 (41%)
PotE <235..564 CDD:223605 138/329 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D250396at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.820

Return to query results.
Submit another query.