DRSC/TRiP Functional Genomics Resources

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Protein Alignment SerT and si:ch211-225b11.1

DIOPT Version :9

Sequence 1:NP_001369117.1 Gene:SerT / 37895 FlyBaseID:FBgn0010414 Length:768 Species:Drosophila melanogaster
Sequence 2:NP_001103931.1 Gene:si:ch211-225b11.1 / 561694 ZFINID:ZDB-GENE-060531-39 Length:609 Species:Danio rerio


Alignment Length:619 Identity:258/619 - (41%)
Similarity:374/619 - (60%) Gaps:43/619 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 DDSNEDDGDHTTPAKVTDPLAPKLANNERILVVSVTERTRETWGQKAEFLLAVIGFAVDLGNVWR 99
            :...|::...||..:..   |.:||..|:     .....|||||::.||:||.||:||.||||||
Zfish    23 EGKEEEELARTTTDRAE---ATRLAKVEQ-----QAAEPRETWGRRLEFVLATIGYAVGLGNVWR 79

  Fly   100 FPYICYQNGGGAFLVPYCLFLIFGGLPLFYMELALGQFHRCGCLSIWKRICPALKGVGYAICLID 164
            |||:||::||||||:||.:.|...|:||.:||..:||:.|.|.:....:|||..||||.|..:|.
Zfish    80 FPYLCYRSGGGAFLIPYMIMLFLCGIPLLFMEFTVGQYTRLGPVHALAQICPLFKGVGLATVVIS 144

  Fly   165 IYMGMYYNTIIGWAVYYLFASFTSKLPWTSCDNPWNT-ENCMQVTSENFTELATSPAKEFFERKV 228
            ..:..|||.::.||:|||..||:..|||.||:|.||| .||......|.|.| .|.:::||:.||
Zfish   145 YVLCTYYNVLMTWALYYLLHSFSPSLPWQSCNNTWNTVANCSTGFPGNATHL-QSASQQFFDHKV 208

  Fly   229 LESYKGNGLDFMGPVKPTLALCVFGVFVL----VYFSLWKGVRSAGKVVWVTALAPYVVLIILLV 289
            ||  ..:|::..|.|:..|    ||:.||    |||.::|||:|.||||:.||..||.:|..|||
Zfish   209 LE--MTSGIERAGGVRWEL----FGLLVLAWGIVYFCIFKGVKSTGKVVYFTATFPYFILFALLV 267

  Fly   290 RGVSLPGADEGIKYYLTPEWHKLKNSKVWIDAASQIFFSLGPGFGTLLALSSYNKFNNNCYRDAL 354
            ..|.||||..||.::|.|.|.||...:||::||:|||.|:|..||::::::||||:|||..||..
Zfish   268 NNVQLPGAKNGILFFLMPNWSKLLEVQVWVNAAAQIFNSIGISFGSMISMASYNKYNNNILRDTF 332

  Fly   355 ITSSINCLTSFLAGFVIFSVLGYMAYVQKTSIDKVGLEGPGLVFIVYPEAIATMSGSVFWSIIFF 419
            |.|..|..||.:|||||||.:||||::....:|.:..:||||||:||||..:||..|..|:.:||
Zfish   333 IVSLANSATSIVAGFVIFSAIGYMAHIHNLPVDDIATDGPGLVFVVYPEVFSTMPVSQLWAPLFF 397

  Fly   420 LMLITLGLDSTFGGLEAMITALCDEYPR---VIGRRRELFVLLLLAFIFLCALPTMTYGGVVLVN 481
            :||:.|||||.|..:|..:|.:.|.:.|   .:.:|:||.||.:.:|.||..:|.:|.||:.:..
Zfish   398 IMLLCLGLDSQFAMVEVAVTFIMDGFGRKALKVFKRKELIVLAVCSFGFLLGIPHITRGGIYVFQ 462

  Fly   482 FLNVYGPGLAILFVVFVEAAGVFWFYGVDRFSSDVEQMLGSKPGLFWRICWTYISPVFLLTIFIF 546
            .::.|...::::|:.|.|...|...:||.|.|..||.|||.||.||:||||.|:||:.:|.|.|.
Zfish   463 LMDHYTAVVSLMFLAFFEVLAVTLIFGVKRLSVMVENMLGKKPNLFFRICWQYLSPMLVLGILIS 527

  Fly   547 SIMGY-KEMLGEEYYYPDWSYQVGWAVTCSSVLCIPMYIIYKFFFASKGGCRQRLQESFQPEDNC 610
            ||:.| ....|:.|.||.|:..:||.::..|::.||:..::: .:.::|...|||::|..|..:.
Zfish   528 SIVQYTPARYGKSYTYPLWAELLGWFISLVSIIWIPLGALHE-LWTTEGSLLQRLKKSITPTVDL 591

  Fly   611 GSVVPGQQGTSVXHDHAQVHVNIRTSCTSIKIYN 644
            .|                  |:.:.|..||.::|
Zfish   592 ES------------------VSEKPSTESIALFN 607

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SerTNP_001369117.1 SLC6sbd_SERT-like 74..607 CDD:271388 244/541 (45%)
si:ch211-225b11.1NP_001103931.1 SLC5-6-like_sbd 54..587 CDD:294310 244/540 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D250396at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.920

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