DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SerT and slc6a9

DIOPT Version :9

Sequence 1:NP_001369117.1 Gene:SerT / 37895 FlyBaseID:FBgn0010414 Length:768 Species:Drosophila melanogaster
Sequence 2:XP_005163551.1 Gene:slc6a9 / 494490 ZFINID:ZDB-GENE-050105-3 Length:653 Species:Danio rerio


Alignment Length:599 Identity:253/599 - (42%)
Similarity:365/599 - (60%) Gaps:48/599 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    44 HTTPAKVTD-----PLAP-KLANNERILVVSVTERTRETWGQKAEFLLAVIGFAVDLGNVWRFPY 102
            :||.|.:.|     |..| |...|.|          |..||.:.||:|..:|:||.|||||||||
Zfish     5 NTTAAVMADQNGAVPGEPVKRDENSR----------RGNWGNQIEFVLTSVGYAVGLGNVWRFPY 59

  Fly   103 ICYQNGGGAFLVPYCLFLIFGGLPLFYMELALGQFHRCGCLSIWKRICPALKGVGYAICLIDIYM 167
            :||:||||||:.||.:.|:|.|:|||::||:.|||...|||.:|| :.|..|||||.:.::..|:
Zfish    60 LCYRNGGGAFMFPYFIMLVFCGIPLFFLELSFGQFTSLGCLGVWK-VSPMFKGVGYGMMVVSTYI 123

  Fly   168 GMYYNTIIGWAVYYLFASFTSKLPWTSCDNPWNTENCMQVTS---------------ENFTELA- 216
            |:|||.:|..|.||.|.|.|:.||||.|:|||||.:|..|.|               ...||:. 
Zfish   124 GIYYNVVICIAFYYFFMSMTNLLPWTYCNNPWNTPDCSGVVSTHRANATFANMSAVVSGVTEIVN 188

  Fly   217 ----TSPAKEFFERKVLESYKGNGLDFMGPVKPTLALCVFGVFVLVYFSLWKGVRSAGKVVWVTA 277
                |||::|::...||..  .:|:...|.|:..:..|:...:.:|:..|.:||:|:||||:.||
Zfish   189 RTKRTSPSEEYWRNYVLNI--SDGIGNFGEVRLPILGCLAVSWFVVFLCLIRGVKSSGKVVYFTA 251

  Fly   278 LAPYVVLIILLVRGVSLPGADEGIKYYLTPEWHKLKNSKVWIDAASQIFFSLGPGFGTLLALSSY 342
            ..|||||.||.:||::|.||..||||||||:|.|:.::|||.|||||||:|||..:|.|:.::||
Zfish   252 TFPYVVLTILFIRGITLDGAISGIKYYLTPQWQKILDAKVWGDAASQIFYSLGCAWGGLITMASY 316

  Fly   343 NKFNNNCYRDALITSSINCLTSFLAGFVIFSVLGYMAYVQKTSIDKVGLEGPGLVFIVYPEAIAT 407
            |||:|||:||::|.|..||.||..|||||||:||:||:.....:.:|...||||.|:.||||:..
Zfish   317 NKFHNNCFRDSIIISVTNCGTSVYAGFVIFSILGFMAHHLGVDVSEVADHGPGLAFVAYPEALTL 381

  Fly   408 MSGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPRVIGR----RRELFVLLLLAFI-FLC 467
            :..|..||::||.|||.|||.:.|..||.::||:.||    ||.    :.:.:|.|.:|.| ||.
Zfish   382 LPISPLWSLLFFFMLILLGLGTQFCLLETLVTAVVDE----IGTDWIIKNKTYVTLGVAIIGFLL 442

  Fly   468 ALPTMTYGGVVLVNFLNVYGPGLAILFVVFVEAAGVFWFYGVDRFSSDVEQMLGSKPGLFWRICW 532
            .:|..|..|:..:..::.|....:::.:..:....:.:.||...:..|||.|||..|.:|:||||
Zfish   443 GVPLTTQAGIYWLLLMDNYAASFSLVIISCIMCICIMYVYGHKNYFKDVEMMLGFPPPIFFRICW 507

  Fly   533 TYISPVFLLTIFIFSIMGYKEMLGEEYYYPDWSYQVGWAVTCSSVLCIPMYIIYKFFFASKGGCR 597
            .|:||..:..|.||:::.||.:...:|.||.||..:|:|:..|||:|||:|.::|...:......
Zfish   508 RYVSPFIITFILIFTVIQYKPITYNDYVYPGWSLVIGFAMALSSVICIPIYALFKIAMSEGSTFL 572

  Fly   598 QRLQESFQPEDNCG 611
            :||:.|.:|:.:.|
Zfish   573 ERLKNSVKPDPDWG 586

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SerTNP_001369117.1 SLC6sbd_SERT-like 74..607 CDD:271388 242/557 (43%)
slc6a9XP_005163551.1 SLC6sbd_GlyT1 15..598 CDD:212067 249/589 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D250396at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.820

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