DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SerT and SLC6A17

DIOPT Version :9

Sequence 1:NP_001369117.1 Gene:SerT / 37895 FlyBaseID:FBgn0010414 Length:768 Species:Drosophila melanogaster
Sequence 2:NP_001010898.1 Gene:SLC6A17 / 388662 HGNCID:31399 Length:727 Species:Homo sapiens


Alignment Length:659 Identity:212/659 - (32%)
Similarity:330/659 - (50%) Gaps:110/659 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 NNEDDSNEDDGDHTTPAKVTDPL---------------APKLANNERILVVSVTERTRETWGQKA 81
            |::....|...:|.|.: |.|.|               |.:....::.:...:....|..|..|.
Human     4 NSKVTQREHSSEHVTES-VADLLALEEPVDYKQSVLNVAGEAGGKQKAVEEELDAEDRPAWNSKL 67

  Fly    82 EFLLAVIGFAVDLGNVWRFPYICYQNGGGAFLVPYCLFLIFGGLPLFYMELALGQFHRCGCLSIW 146
            :::||.|||:|.|||:|||||:|.:|||||:||||.:.||..|:|||::|||:||..|.|.:.:|
Human    68 QYILAQIGFSVGLGNIWRFPYLCQKNGGGAYLVPYLVLLIIIGIPLFFLELAVGQRIRRGSIGVW 132

  Fly   147 KRICPALKGVGYAICLIDIYMGMYYNTIIGWAVYYLFASFTSKLPWTSCDNPWNTENCMQVTSEN 211
            ..|||.|.|:|::.|::.:::|:|||.||||:::|.|.||...|||:.|  |......:.|..  
Human   133 HYICPRLGGIGFSSCIVCLFVGLYYNVIIGWSIFYFFKSFQYPLPWSEC--PVVRNGSVAVVE-- 193

  Fly   212 FTELATSPAKEFF-ERKVLESYKGNGLDFMGPVKPTLALCVFGVFVLVYFSLWKGVRSAGKVVWV 275
             .|...|.|..:| .|:.|:.  .:.:...|.:...:.||:...:.:|..::.||::|:|||::.
Human   194 -AECEKSSATTYFWYREALDI--SDSISESGGLNWKMTLCLLVAWSIVGMAVVKGIQSSGKVMYF 255

  Fly   276 TALAPYVVLIILLVRGVSLPGADEGIKYYLTPEWHKLKNSKVWIDAASQIFFSLGPGFGTLLALS 340
            ::|.|||||...||||:.|.||.:||.:..||:..|:.:.:||.:||:|:||:||.|||.::|.|
Human   256 SSLFPYVVLACFLVRGLLLRGAVDGILHMFTPKLDKMLDPQVWREAATQVFFALGLGFGGVIAFS 320

  Fly   341 SYNKFNNNCYRDALITSSINCLTSFLAGFVIFSVLGYMAYVQ----------------------- 382
            ||||.:|||:.||.:.|.||..||.||..|:|:|||:.|.:.                       
Human   321 SYNKQDNNCHFDAALVSFINFFTSVLATLVVFAVLGFKANIMNEKCVVENAEKILGYLNTNVLSR 385

  Fly   383 ------------------------------------------KTSIDKVGLEGPGLVFIVYPEAI 405
                                                      :..:|| .::|.||.||.:.||:
Human   386 DLIPPHVNFSHLTTKDYMEMYNVIMTVKEDQFSALGLDPCLLEDELDK-SVQGTGLAFIAFTEAM 449

  Fly   406 ATMSGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEY--PRVIGRRRELFVLLLLAFIFLCA 468
            .....|.|||::||||||.|||.|..|.:..:.|.:.|.:  |      :|:|.:....|.||..
Human   450 THFPASPFWSVMFFLMLINLGLGSMIGTMAGITTPIIDTFKVP------KEMFTVGCCVFAFLVG 508

  Fly   469 LPTMTYGGVVLVNFLNVYGPGLAILFVVFVEAAGVFWFYGVDRFSSDVEQMLGSKPGLFWRICWT 533
            |..:...|...|...:.|...|.:..:|.:|...|.|.||..:|..::.:|||.:|..|:...|.
Human   509 LLFVQRSGNYFVTMFDDYSATLPLTLIVILENIAVAWIYGTKKFMQELTEMLGFRPYRFYFYMWK 573

  Fly   534 YISPVFLLTIFIFSIM-------GY----KEMLGEEY-YYPDWSYQVGWAVTCSSVLCIPMYIIY 586
            ::||:.:..:...||:       ||    ||...|.| |:|:|:..:...:...:.|.||:..:.
Human   574 FVSPLCMAVLTTASIIQLGVTPPGYSAWIKEEAAERYLYFPNWAMALLITLIVVATLPIPVVFVL 638

  Fly   587 KFFFASKGG 595
            :.|.....|
Human   639 RHFHLLSDG 647

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SerTNP_001369117.1 SLC6sbd_SERT-like 74..607 CDD:271388 204/602 (34%)
SLC6A17NP_001010898.1 SLC6sbd_NTT4 60..648 CDD:271403 204/602 (34%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 680..727
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D250396at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
32.820

Return to query results.
Submit another query.