DRSC/TRiP Functional Genomics Resources

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Protein Alignment SerT and Slc6a16

DIOPT Version :9

Sequence 1:NP_001369117.1 Gene:SerT / 37895 FlyBaseID:FBgn0010414 Length:768 Species:Drosophila melanogaster
Sequence 2:NP_001311464.1 Gene:Slc6a16 / 381884 MGIID:2685930 Length:742 Species:Mus musculus


Alignment Length:639 Identity:161/639 - (25%)
Similarity:288/639 - (45%) Gaps:121/639 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 AKVTDPLAPKLANNERILVVSVTERT-----------------RETWGQKAEFLLAVIGFAVDLG 95
            |::|  |.||.:..|...|.::.:.:                 |:.|..|.|::||::.:.:...
Mouse    84 ARIT--LQPKPSVTELATVTTLEQESSELVNRMSRESSEGYPPRQLWASKVEYMLAIMSYLLMPS 146

  Fly    96 NVWRFPYICYQNGGGAFLVPYCLFLIFGGLPLFYMELALGQFHRCGCLSIWKRICPALKGVGYAI 160
            .|.||.......|..:|.:.|.|.|:..|:||.::|:|:||..:.....:||.:.|...||||::
Mouse   147 GVLRFASGWVHKGSCSFFIAYILMLLGIGIPLLFLEMAVGQRAQQSSADMWKNLSPWFGGVGYSM 211

  Fly   161 CLIDIYMGMYYNTIIGWAVYYLFASFTSKLPWTSCDNPWNTEN----CMQVTSENFTELATSPAK 221
            .::......|.|....|.::|:...|...:||..|....|:.|    |.|.||..:         
Mouse   212 VMVCFITNTYLNVFNSWILFYMSHIFYFVVPWDQCPLQRNSSNFDPECEQATSYTY--------- 267

  Fly   222 EFFERKVLESYKGNGLDFMGPVKPTLALCVFGVFVLVYFSLWKGVRSAGKVVWVTALAPYVVLII 286
             |:.||.|::  .:.::..|....:|.:.:|..|.|:...|..|::|.|||::|..|.||.:::.
Mouse   268 -FWYRKTLKA--SDRIEDGGQPSFSLGMSLFLSFCLICAFLVNGIKSIGKVLFVLLLVPYSIIVC 329

  Fly   287 LLVRGVSLPGADEGIKYYLTPEWHKLKNSKVWIDAASQIFFSLGPGFGTLLALSSYNKFNNNCYR 351
            .|:|.:|:.||:.|:|:.|..:...:.:..:|..|..|:.|.:|.|||.:::|:|:....|||..
Mouse   330 FLIRTLSMDGAEYGLKHLLILKVASISDLTIWCHAGIQVLFDIGLGFGPIVSLASHVPDFNNCMA 394

  Fly   352 DALITSSINCLTSFLAGFVIFSVLGY--------------------------------------- 377
            ||.:.:....:|..:....:.|:||:                                       
Mouse   395 DAFLMALFKIITLLMTTPFLLSILGFWATTTTHHCCKKNQETLLRLVAQGILPPDAQPPDLSGNP 459

  Fly   378 -------------------MAYVQKTSIDKVGL---EGPGLVFIVYPEAIATMSGSVFWSIIFFL 420
                               ::.|.:.|:.|..|   :.|..:|:::.|.|:.:.||.||.::|||
Mouse   460 TSNYNSWLSSLPPPLRSAVLSVVPECSVQKQFLKIKDNPRFLFLIFTEVISLLPGSGFWIVLFFL 524

  Fly   421 MLITLGLDSTFGGLEAMITALCDEYPRVIGRRRELFVLLLLAFIFLCALPTMTYGGVVLVNFLNV 485
            :|:||||.|....:...:..|.|.:|....:.|.|.|.:.:| :|||.|..:...|:...:.|:.
Mouse   525 LLLTLGLCSNLMFMLGNVLTLQDTFPFCRRQPRLLIVCVSMA-MFLCGLIFIQPSGIYYFSLLSE 588

  Fly   486 YGPGLAILFVVFVEAAGVFWFYGVDRFSSDVEQMLGSKP---GLFWRICWTYISPVFLL----TI 543
            ....:.::.::..|...|.|.||.|||.:|:..:|| :|   |..|  .|.||||:.:|    ::
Mouse   589 CWVAVPVIIIIICENLAVAWAYGADRFLADMVALLG-RPIFSGCGW--LWCYISPMVVLGLLTSV 650

  Fly   544 FIFSIMG-----------YKEMLGEEYYYPDWSYQVGWAVTCSSVLCIPMYIIY 586
            |::.:.|           .||::   ..:|:||..:...:|...::.||.|.:|
Mouse   651 FVYLVKGPLVYFAWDSSTSKEVV---RVFPEWSKILIAGLTVFVLMPIPAYFVY 701

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SerTNP_001369117.1 SLC6sbd_SERT-like 74..607 CDD:271388 154/596 (26%)
Slc6a16NP_001311464.1 SLC5-6-like_sbd 125..694 CDD:294310 150/587 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D250396at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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