DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SerT and GlyT

DIOPT Version :9

Sequence 1:NP_001369117.1 Gene:SerT / 37895 FlyBaseID:FBgn0010414 Length:768 Species:Drosophila melanogaster
Sequence 2:NP_611836.2 Gene:GlyT / 37772 FlyBaseID:FBgn0034911 Length:1188 Species:Drosophila melanogaster


Alignment Length:653 Identity:247/653 - (37%)
Similarity:370/653 - (56%) Gaps:96/653 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    70 TERTRETWGQKAEFLLAVIGFAVDLGNVWRFPYICYQNGGGAFLVPYCLFLIFGGLPLFYMELAL 134
            :|..|.||..:.:|||:::|::|.|||||||||:||.|||||||:|:.:.|:..||||.:|||:.
  Fly    53 SEHERGTWTGRFDFLLSLLGYSVGLGNVWRFPYLCYNNGGGAFLIPFTIMLVIAGLPLMFMELSF 117

  Fly   135 GQFHRCGCLSIWKRICPALKGVGYAICLIDIYMGMYYNTIIGWAVYYLFASFTSKLPWTSCDNPW 199
            ||:...|.:::::|.||..:|:|..:.|:...:.:|||.||.|.::|:||||...|||.:|:..|
  Fly   118 GQYAALGPVAVYRRFCPLFRGLGTGMILVSAIVMLYYNLIIAWTIFYMFASFAPVLPWQNCEPAW 182

  Fly   200 NTENCM------------------------QVTSENFTELATS-----PAKEFFERKVLESYKGN 235
            :|:.|.                        .....|.|.||..     ||:|:|...||...|  
  Fly   183 STKYCFSYAQADQCEATNGTYYLRTCHNATSAAENNITTLALGALKRPPAEEYFNNFVLGLSK-- 245

  Fly   236 GLDFMGPVKPTLALCVFGVFVLVYFSLWKGVRSAGKVVWVTALAPYVVLIILLVRGVSLPGADEG 300
            |::..|.:|.:||.|:|..:.:|:..|.|||:|:||||:.|||.|||||:||.||||:||||..|
  Fly   246 GIEETGSIKLSLAACLFLAWTIVFLCLCKGVQSSGKVVYFTALFPYVVLVILFVRGVTLPGASTG 310

  Fly   301 IKYYLTPEWHKLKNSKVWIDAASQIFFSLGPGFGTLLALSSYNKFNNNCYRDALITSSINCLTSF 365
            |.:||||:|.:|.|::||.|||.||||:|.|.:|.|:.|||||||:||||:|:||.:..|..|||
  Fly   311 ILFYLTPDWKQLANAQVWGDAAVQIFFALSPAWGGLITLSSYNKFSNNCYKDSLIVAFCNIATSF 375

  Fly   366 LAGFVIFSVLGYMAYVQKTSIDKVGLEGPGLVFIVYPEAIATMSGSVFWSIIFFLMLITLGLDST 430
            .||.||||::|::|:.....::||..:|.||.||||||.:..:..|..|:::||:||:||||||.
  Fly   376 FAGLVIFSIIGFLAHELNVDVEKVVDQGAGLAFIVYPEVVTRLPVSPVWAVLFFVMLLTLGLDSQ 440

  Fly   431 FGGLEAMITALCDEYPRVIGRRRELFVLLLLA-FIFLCALPTMTYGGVVLVNFLNVYGPGLAILF 494
            |..:|.:.||:.|.:|.:  |:.:::|:|.:| |.::..|...|..|:..:..::.|....::|.
  Fly   441 FALMETVTTAILDRFPNL--RQYKIWVVLSVAIFGYIGGLGFTTNSGMYWLQLMDKYAANWSVLL 503

  Fly   495 VVFVEAAGVFWFYGVDRFSSDVEQMLGSKP---GLFWRICWTYISPVFLLTIFIFSIMGYKEMLG 556
            :...|...:.|.||..||.:|::.|:|.:.   ..||.|.|.||:|..||.|..|:.:.||....
  Fly   504 IAISECILIAWIYGSQRFLNDIQGMIGKRSWFWNFFWGIMWRYITPATLLFILFFNWVEYKPAKY 568

  Fly   557 EEYYYPDWSYQVGWAVTCSSVLCIPMYIIYKFFFASKGGCRQRLQESFQPEDNCGSVVPGQQGTS 621
            ..|.||.|:..|||.|.     .:|:.:|:...|          ||.::                
  Fly   569 GHYVYPMWADAVGWIVG-----LLPVLVIFLVAF----------QEIWR---------------- 602

  Fly   622 VXHDHAQVHVNIRTSCTSIKIYNLNCSSNSNSLSPTTS-GAEGRSCYSTNLNCNHSCPSEDQYRS 685
                 |.:.::.|.     :|.:|        |.||.. |..||.|  .||:.       ::|:|
  Fly   603 -----APMSLSFRD-----RIKHL--------LQPTAEWGPAGRPC--VNLHA-------ERYQS 640

  Fly   686 RNH 688
            :|:
  Fly   641 QNY 643

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SerTNP_001369117.1 SLC6sbd_SERT-like 74..607 CDD:271388 230/565 (41%)
GlyTNP_611836.2 SNF 57..603 CDD:249680 230/585 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D16523at7147
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11616
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.920

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