DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SerT and snf-11

DIOPT Version :9

Sequence 1:NP_001369117.1 Gene:SerT / 37895 FlyBaseID:FBgn0010414 Length:768 Species:Drosophila melanogaster
Sequence 2:NP_505873.2 Gene:snf-11 / 191770 WormBaseID:WBGene00004910 Length:610 Species:Caenorhabditis elegans


Alignment Length:588 Identity:229/588 - (38%)
Similarity:349/588 - (59%) Gaps:54/588 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    68 SVTERTRETWGQKAEFLLAVIGFAVDLGNVWRFPYICYQNGGGAFLVPYCLFLIFGGLPLFYMEL 132
            ||.|  ||.|...|:|:::.||:|:.|||||||||:||||||||||:|||:.|:|.|.|||.:|.
 Worm     6 SVAE--REQWSSWADFIMSCIGYAIGLGNVWRFPYLCYQNGGGAFLIPYCISLVFCGAPLFILET 68

  Fly   133 ALGQFHRCGCLSIWKRICPALKGVGYAICLIDIYMGMYYNTIIGWAVYYLFASFT-SKLPWTSCD 196
            :.||....|.|.::| |||..||||.|..::..::.:||..::.||..||:.||| |.:||.:||
 Worm    69 SWGQLMSVGGLGMFK-ICPIFKGVGIAAAVMAFWLNIYYIVVLSWAATYLYNSFTMSDVPWKNCD 132

  Fly   197 NPWNTENCMQ---------------------VTSENFTEL---------------------ATSP 219
            :.|||.||..                     :|.::..|.                     ..||
 Worm   133 HAWNTPNCRSEYVKIPCDSNRTIAEFFNVKVLTHDHIHEYKKQFFVGEKMNWTVCSAADLSVVSP 197

  Fly   220 AKEFFERKVLESYKGNGLDFMGPVKPTLALCVFGVFVLVYFSLWKGVRSAGKVVWVTALAPYVVL 284
            .|||:..:||..  .:||:..|.::..|||.:..|:::.|..::|||:..||||::||..||::|
 Worm   198 VKEFWNHRVLGI--SSGLENPGGIRWDLALFLLLVWIICYLCIFKGVKWTGKVVYITASFPYMML 260

  Fly   285 IILLVRGVSLPGADEGIKYYLTPEWHKLKNSKVWIDAASQIFFSLGPGFGTLLALSSYNKFNNNC 349
            ..||:||::|.||..|:::||.|::.||..||||:||.:|:|||.|.|.|.|:||.||||||||.
 Worm   261 FCLLIRGLTLEGAGVGLEFYLKPDFSKLLESKVWVDAVTQVFFSYGLGLGALVALGSYNKFNNNV 325

  Fly   350 YRDALITSSINCLTSFLAGFVIFSVLGYMAYVQKTSIDKVGLEGPGLVFIVYPEAIATMSGSVFW 414
            |:.||....:|..||..|||||||.:|:||..|:.|:.:|...||||:|:.||..|..:..:.||
 Worm   326 YKQALTVCFVNSGTSVFAGFVIFSFIGFMATQQEKSVAEVAQAGPGLLFLAYPSGILQLPYTQFW 390

  Fly   415 SIIFFLMLITLGLDSTFGGLEAMITALCDEYPRVIGRR--RELFVLLLLAFIFLCALPTMTYGGV 477
            |.:||||::.||:||.|..:|...||:.||:|::..::  ||:||.::....:|..|.|:|.||.
 Worm   391 SCLFFLMVLFLGVDSQFCTMEGFFTAIIDEFPQIRRKKYGREIFVGVICVISYLIGLTTVTEGGF 455

  Fly   478 VLVNFLNVY-GPGLAILFVVFVEAAGVFWFYGVDRFSSDVEQMLGSKPGLFWRICWTYISPVFLL 541
            .:....:.| ..|.|:|:::|.|...:.|..|:||:...::.|:|..|..:|:.||.:.:|....
 Worm   456 YVFQLFDFYAASGWALLWLLFFECIAISWSLGIDRWYEHMKSMIGYYPSAWWKFCWVFATPSVCF 520

  Fly   542 TIFIFSIMGYKEML--GEEYYYPDWSYQVGWAVTCSSVLCIPMYIIYKFFFASKGGCRQRLQESF 604
            .:.:|.::.|:.:.  ...|.||.|.:..||.::.||:||||.|.|: .:|.:.|..:::::...
 Worm   521 GVLLFGLIKYQPLRIDAYNYDYPVWGHIFGWFLSLSSMLCIPGYAIW-IWFKTPGTVQEKIKLLC 584

  Fly   605 QPE 607
            :|:
 Worm   585 RPD 587

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SerTNP_001369117.1 SLC6sbd_SERT-like 74..607 CDD:271388 225/580 (39%)
snf-11NP_505873.2 SLC6sbd-TauT-like 10..586 CDD:271387 225/579 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D250396at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

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