DRSC/TRiP Functional Genomics Resources

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Protein Alignment SerT and snf-10

DIOPT Version :9

Sequence 1:NP_001369117.1 Gene:SerT / 37895 FlyBaseID:FBgn0010414 Length:768 Species:Drosophila melanogaster
Sequence 2:NP_505682.2 Gene:snf-10 / 191769 WormBaseID:WBGene00004909 Length:673 Species:Caenorhabditis elegans


Alignment Length:690 Identity:171/690 - (24%)
Similarity:289/690 - (41%) Gaps:108/690 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 SGSSDFAGAAATTGRSNPAPWSDDKESPNNEDDSNEDDGDHTTPAKVTDPLAPKLANNERILVVS 68
            :.||||.....|..:|.....|...|:.|  ||:.....:...|.|.|.. |..::|   |...|
 Worm     2 ASSSDFKQLKQTRTKSEETTRSASNETVN--DDNRSTTTEEIIPIKKTSN-ATAISN---IGFKS 60

  Fly    69 VTERTRE-----------TWGQKAEFLLAVIGFAVDLGNVWRFPYIC-YQNGGGAFLVPYCLFLI 121
            ||....|           ||..|.|.:.|.:.|....||:|.|||:| |..|...:...:|  .:
 Worm    61 VTNLALENIGLDTKMEGPTWTSKWEAITATLSFVTCSGNIWFFPYLCGYYGGWFPYQFTFC--YV 123

  Fly   122 FGGLPLFYMELALGQFHRCGCLSIWKRICPALKGVGYAICLIDIYMGMYYNTI--IGWAVY---- 180
            |..:||.|:|.||||:.....||::.|:.||:.|:...:|.|     |.:.||  ..||:|    
 Worm   124 FIAVPLLYLETALGQYASASPLSVFSRMAPAMAGLSAGMCFI-----MVFRTISLSVWAIYDLTI 183

  Fly   181 --YLFASFTSKLPWTSCDNPWNTENCMQV-TSENFTELATSPAKEFFE-RKVLESYKG------- 234
              :...|..|..||.||....:.:.|:.. .|...|.:.....||..| :::|.:.:|       
 Worm   184 FTHASQSIWSTSPWESCQESQSGDYCVNYKLSSKCTWIQPGSDKECDEYQEMLIATRGFQQRKSP 248

  Fly   235 -----NGLDF--------MGPVKPTLALCVFGVFVLVYFSLWKGVRSAG--KVVWVTALAPYVVL 284
                 :||.:        ..|...|..:|...:::::      |:.|.|  ||:..|.:....:|
 Worm   249 FMSFVHGLMYKRSITMNDWEPPSVTSIICAVCLWIII------GIISIGGSKVLGRTGIVALTLL 307

  Fly   285 ----IILLVRGVSLPGADEGI-KYYLTPEWHKLKNSKV--WIDAASQIFFSLGPGFGTLLALSSY 342
                |:||..|:||....... .::...|.::.|...|  |.|||:....:|..|.|.:...:|.
 Worm   308 LVGTIMLLSYGMSLNDTTNVFTAFFYQSEGYEDKWMWVWSWADAAAHALRALNVGCGGIQKFASL 372

  Fly   343 NKFNNNCYRDALITSSIN---CLTSFLAGFVIFSVLGYMAYVQKTSIDKVGLEG-PGLVFIVYPE 403
            |.|:|..:||.|:.|.::   .:.:.|..|:..:.:|.:.|....:.:::.|.. |.::..|..|
 Worm   373 NNFHNKIHRDVLLISIVSFVFYICTGLLSFMFMAEIGRLYYPDLEASERIQLYATPVMIESVISE 437

  Fly   404 AIATMSGSVFWSIIFFLMLITL---GLDSTFGGLEAMITALCDEYPRVIGR------RRELFVLL 459
            .:...|....|..:|:|.|...   |:.|....:.:||....:...|..|:      :|.:.:.:
 Worm   438 ILTNSSMGSIWVFLFWLTLAACSIQGISSYIWVISSMIVERLNGSRRKYGKALASWHKRAIILAI 502

  Fly   460 LLAFIFLCALPTMTYGGVVLVNFLNVYGPGLAILFVVFVEAAGVFWFYGVDRFSSDVEQMLG--S 522
            :.....:.:||.:..||:.|::.:..:. ....:|:.|||...|.:.||..|||.::..|:|  .
 Worm   503 MSVTGLISSLPFLGNGGINLMSSIETFA-SYGTIFIAFVEVITVSYVYGFKRFSVNIRAMIGGHG 566

  Fly   523 KPGLFWRICWTYISPVFLLTIF--IFSIMGYKEMLGEEYYYPDWSYQVGWAVTCSSVLCIPMYII 585
            .|.:||.:.|..|||:.|:..|  |.:..|.|:...|.....|   .:|:     |:|.:|...:
 Worm   567 PPNVFWWLNWLVISPILLIVTFGCIVATFGQKKAFNENSIVSD---PIGY-----SLLVMPCIFV 623

  Fly   586 YKFFFASKGGCRQRLQE------------SFQPEDNCGSV 613
            ..:|...:...|:.::.            ...|||...:|
 Worm   624 ILYFLRDEYDRRKNMEPFVVMIRATGDWGPMNPEDRRNAV 663

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SerTNP_001369117.1 SLC6sbd_SERT-like 74..607 CDD:271388 147/612 (24%)
snf-10NP_505682.2 SNF 78..628 CDD:264495 144/571 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160166287
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.740

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