DRSC/TRiP Functional Genomics Resources

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Protein Alignment SerT and F56F4.3

DIOPT Version :9

Sequence 1:NP_001369117.1 Gene:SerT / 37895 FlyBaseID:FBgn0010414 Length:768 Species:Drosophila melanogaster
Sequence 2:NP_491770.3 Gene:F56F4.3 / 186398 WormBaseID:WBGene00018980 Length:701 Species:Caenorhabditis elegans


Alignment Length:697 Identity:157/697 - (22%)
Similarity:266/697 - (38%) Gaps:185/697 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 DDKESPNNEDDSNE--DDGDHTTPAKVTDP-LAP-KLANNERILVVSVTERTRETWGQKAEFLLA 86
            |..||.:...|..|  |:.:....:...:| |.| |:...|....:.....:|.:..::...||:
 Worm    53 DSTESSSENPDGIEKFDNDEELAISPTGNPNLNPSKIEAEELEQEIGSRNISRPSTYRQLSLLLS 117

  Fly    87 VIGFAVDLGNVWRFPYICYQNGGGAFLVPYCLFLIFGGLPLFYMELALGQFHRCGCLSIWKRICP 151
            .:..   |.|...|....:.:||..|.|||.:.|...|:|:...||:|.||.......::.|:.|
 Worm   118 CVTL---LKNNMVFIECFFNHGGVYFFVPYFIILFVLGVPMAIFELSLAQFSSIPMNGMFTRMAP 179

  Fly   152 ALKGVGYAI-CLIDIYMGMYYNTIIGWAVY---------YLFASF----TSKLPWTSCDNPWNTE 202
            .|.|:.:.| ||..||           .||         |.:.||    |..:.|..||: :...
 Worm   180 MLGGIPWLILCLRIIY-----------TVYIAFDPRFLLYAYKSFVTVITGNMNWIHCDD-YKGV 232

  Fly   203 NCMQVT---SENFTELATSPAKEFFERKV-------LESYKG------------------NGLDF 239
            .|...|   ..|...|.....|:...||:       |.:|.|                  ||||.
 Worm   233 RCFDPTWSCKINEFRLNGECVKDVHIRKLAQQQDYGLLTYFGLREYRLISIIPSQIYKEINGLDI 297

  Fly   240 MGPVKPTLALCVFGVFVLVYFSLWKGVRSAGKVVWVTALAPYVVLIILL--VRGVSLPGADEGI- 301
            |..:   ||..||  .::..|..:||.|      :..:||.:.|.:.:|  :..|.|...|.|. 
 Worm   298 MDNI---LAALVF--LLIAGFITYKGHR------FFASLAGFFVFLPILGMIPAVILVYYDVGSR 351

  Fly   302 -KYYLTPEWHKLKNSKV--------WIDAASQIFFSLGPGFGTLLALSSYNKFNNNCYRDALITS 357
             |::..   ..|||:.:        |::||.....::....|||:||.|...|.:|..:||::.:
 Worm   352 KKHFFN---QILKNNDITKIFELSAWLNAARVTVKTVYIADGTLMALGSRADFRHNFIKDAVLLA 413

  Fly   358 SINCLTSFLAGFVIFSVLGYMA-----------YVQKTSIDKVGLE--------------GPGLV 397
            :.......|..|.|..:| |:|           |.:...:....:|              .|.:.
 Worm   414 ASGATYRLLLCFGILPIL-YVANDILYPFAKTVYARGDLVQFHAIELFFSALPSYAIPGISPTVT 477

  Fly   398 FIVYPEAIATMSGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPRVIGRRRE-------L 455
            |.||    |.:.|::.::.:.:.::       ||   |.:|.||...:||::..:::       :
 Worm   478 FFVY----AMLYGTINFAFVAYQVI-------TF---EMLINALHHLFPRLLYLKQKSVRICIIM 528

  Fly   456 FVLLLLAFIFLCALPTMTYGGVVLVNF-----LNVYGPGLAILFVVFVEAAGVFWFYGVDRFSSD 515
            ..:.||.|:::.:||...    :.|.:     ::.|..|| :...||::...|...||..|...:
 Worm   529 ATVTLLLFLYILSLPYKQ----LAVGYQKELAIDDYVVGL-VSTTVFIQLISVSIVYGYKRLLIN 588

  Fly   516 VEQMLGSKP---------GLFWRICWTYISPVFLLTIFIFSIMGYKEMLGEEYYYPDWSYQVGWA 571
            ...||...|         .:|..:.|.:..|:..| :.|.||:..|..:   |::|        .
 Worm   589 FLTMLKHHPVTYKLVEKCRVFLYVMWAFFLPISCL-VSICSIIVKKYQI---YHWP--------L 641

  Fly   572 VTCSSVLCIP---------MYIIYKFFF-----------ASKGGCRQ 598
            |..:::..:|         |||:.|.|.           |::|..|:
 Worm   642 VLYAAISALPLIYLARKLTMYIMRKEFVSGLSQTHRWQPANEGHARE 688

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SerTNP_001369117.1 SLC6sbd_SERT-like 74..607 CDD:271388 146/645 (23%)
F56F4.3NP_491770.3 SLC5-6-like_sbd 73..620 CDD:382020 133/595 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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