DRSC/TRiP Functional Genomics Resources

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Protein Alignment SerT and snf-7

DIOPT Version :9

Sequence 1:NP_001369117.1 Gene:SerT / 37895 FlyBaseID:FBgn0010414 Length:768 Species:Drosophila melanogaster
Sequence 2:NP_499702.2 Gene:snf-7 / 176723 WormBaseID:WBGene00004906 Length:705 Species:Caenorhabditis elegans


Alignment Length:659 Identity:188/659 - (28%)
Similarity:295/659 - (44%) Gaps:125/659 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 TTGRSNP------APWSDDKESPNNEDDSNEDDGDHTTPAKVTDPLAP----------KLANNER 63
            |||.|.|      ||.:..|                 |.|....|:.|          :.|...:
 Worm    11 TTGSSAPSVIPPTAPTASVK-----------------TKAPTKGPVQPQKKPTTVDNGRRAYRNQ 58

  Fly    64 ILVVSVTERTRETWGQKAEFLLAVIGFAVDLGNVWRFPYICYQNGGGAFLVPYCLFLIFGGLPLF 128
            ::|.:|   .|:.: :..|..|:.:|.||.|||:||||...|:|||.:||:.|.:..|...:|..
 Worm    59 VVVENV---DRQAF-RGIESFLSSLGQAVGLGNIWRFPTTAYKNGGLSFLIAYVVCGILFAVPAI 119

  Fly   129 YMELALGQFHRCGCLSIWKRICPALKGVGYAICLIDIYMGMYYNTIIGWAVYYLF-ASFTSKLPW 192
            :||.||||:......:.::|:.|.|:|||:..||:...:|:||..:|.|.|.||| ..:.:|:  
 Worm   120 HMEFALGQYAAKSPPAAFRRMMPILEGVGWMTCLVGAIIGVYYMIVISWIVLYLFNIIYATKI-- 182

  Fly   193 TSCDNPWNTEN---CMQ---------------VTSENFTELATSPAK------------------ 221
            :.|:|.||...   |.:               :...|.|..|:..:|                  
 Worm   183 SKCNNDWNKNRSTICYEGVKQKLCSGYMLNSSLVMTNLTRNASVHSKMMYIDGKCQNATNMKLAV 247

  Fly   222 ---EFFERKVLESYKG----NGLDFMGPVKPTLALCVFGVFVLVYFSLWKGVRSAGKVVWVTALA 279
               :||...|::...|    |.::.  |:...:|:|    :|:...||.:|:::.||:.:.|.|.
 Worm   248 GTEQFFTNFVVKPSTGFTDFNSINV--PMLAAVAVC----WVIAIISLIRGMKAIGKLSYYTVLL 306

  Fly   280 PYVVLIILLVRGVSLPGADEGIKYYLTPEWHK-----------LKNSKVWIDAASQIFFSLGPGF 333
            ||.::|.|::||::|.||..|:.:..   |.|           |.:..|||.|..|:.|||..|.
 Worm   307 PYAIIIALMIRGLTLEGASTGLHFLF---WGKPNEYGHYDFAGLYDPDVWIAALMQMCFSLSIGQ 368

  Fly   334 GTLLALSSYNKFNNNCYRDALITSSINCLTSFLAGFVIFSVLGYMAYVQKTSI------DKVGLE 392
            |.|:.:.||||...|.||||.:....:.|.|.|.|..:||.||::|..:..||      ::|..|
 Worm   369 GGLMNIGSYNKKTYNWYRDAYLVVLCDTLMSLLGGTAVFSTLGFLAEQRNISISNPKGFNEVVQE 433

  Fly   393 GPGLVFIVYPEAIATMSGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPRVIGRRRELFV 457
            |..|.||||.||||.|.....|..:||:||..||:.:....:|.:.:.|.|.: ..:.:.|.:.|
 Worm   434 GHALAFIVYTEAIAQMPYPFLWYALFFVMLFLLGISTEIVIIETVCSCLADRF-HYLRQHRWITV 497

  Fly   458 LLLLAFIFLCALPTMTYGGVVLVNFLNVYGPGLAILFVVFVEAAGVFWFYGVDRFSSDVEQM--- 519
            :.:....||..|...:..|....:..:.|..|::......:....|.|.||:|.|.:|:.:|   
 Worm   498 VTVSTTFFLLGLVMTSDAGFYWFDLYDEYSAGVSATIGTAIMCLTVCWCYGLDNFRADIREMWEE 562

  Fly   520 --------LGSKPGLF-WRICWTYISPVFLLTIFIFSIMGYK-EMLGEEYYYPDWSYQVGWAVTC 574
                    ||  ||.: |.|.|.:::|:..|.|....|...| ...|:...||......||.|..
 Worm   563 PESRLDKYLG--PGAYVWTIVWRFVTPICCLVIMFAWIWDKKYPFKGDSKKYPPVFDAFGWFVAA 625

  Fly   575 SSVLCIPMY 583
            .....:|::
 Worm   626 LPFFVVPVF 634

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SerTNP_001369117.1 SLC6sbd_SERT-like 74..607 CDD:271388 173/584 (30%)
snf-7NP_499702.2 SLC6sbd 70..598 CDD:271359 163/541 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D250396at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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