DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SerT and dat-1

DIOPT Version :9

Sequence 1:NP_001369117.1 Gene:SerT / 37895 FlyBaseID:FBgn0010414 Length:768 Species:Drosophila melanogaster
Sequence 2:NP_499043.1 Gene:dat-1 / 176304 WormBaseID:WBGene00000934 Length:615 Species:Caenorhabditis elegans


Alignment Length:553 Identity:257/553 - (46%)
Similarity:364/553 - (65%) Gaps:21/553 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    74 RETWGQKAEFLLAVIGFAVDLGNVWRFPYICYQNGGGAFLVPYCLFLIFGGLPLFYMELALGQFH 138
            ||.|..|.:|||:|:||||||||:|||||:|::||||.||:||.:.::..|:|||||||.|||::
 Worm    40 REQWSGKLDFLLSVVGFAVDLGNIWRFPYLCFKNGGGVFLIPYSIMVLLTGVPLFYMELCLGQYY 104

  Fly   139 RCGCLSIWKRICPALKGVGYAICLIDIYMGMYYNTIIGWAVYYLFASFTSKLPWTSCDNPWNTEN 203
            |.|.::.|.||||..||:||.:.|...|:..:||.|:.|.::||:.||:..|||.||:|.:|:..
 Worm   105 RKGAITTWGRICPLFKGIGYCVILTAFYVDFFYNVILAWGLHYLYTSFSFNLPWASCNNSYNSPA 169

  Fly   204 CMQV-TSENFTELA-----------TSPAKEFFERKVLESYKGN--------GLDFMGPVKPTLA 248
            |.:. .||:.|.:.           .|.|:|:|.:..|..::.|        .:..:|.|:..:|
 Worm   170 CYEPHWSEDGTAMCRSANQSVSAEKISAAEEYFYKGFLGLHEANAPNSHVIRSVTDLGNVRWDIA 234

  Fly   249 LCVFGVFVLVYFSLWKGVRSAGKVVWVTALAPYVVLIILLVRGVSLPGADEGIKYYLTPEWHKLK 313
            |.:|.|:::.|||:|||:.::|||||.|||.|||||.||.:|||:|||...||:|||.|.:..||
 Worm   235 LSLFVVYLICYFSMWKGIHTSGKVVWFTALFPYVVLGILFIRGVTLPGWQNGIEYYLRPNFEMLK 299

  Fly   314 NSKVWIDAASQIFFSLGPGFGTLLALSSYNKFNNNCYRDALITSSINCLTSFLAGFVIFSVLGYM 378
            ...||.|||:|:|||||||||.|:|.||||.|:||.|.|||.||.|||.||||:|||||||||||
 Worm   300 RPSVWQDAATQVFFSLGPGFGVLMAYSSYNDFHNNVYVDALFTSFINCATSFLSGFVIFSVLGYM 364

  Fly   379 AYVQKTSIDKVGLEGPGLVFIVYPEAIATMSGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCD 443
            :......|:.|..|||||||:|||||::||..:.|||::|||||:||||||:|||.||:||.|.|
 Worm   365 SCKSGKPIEAVAQEGPGLVFVVYPEALSTMPYAPFWSVLFFLMLMTLGLDSSFGGSEAIITGLSD 429

  Fly   444 EYPRVIGRRRELFVLLLLAFIFLCALPTMTYGGVVLVNFLNVYGPGLAILFVVFVEAAGVFWFYG 508
            |:| ::.:.||:||..|.||..:..:...|.||::::.:|.:||....:|..||.||..:.:.||
 Worm   430 EFP-ILKKNREVFVGCLFAFYMVIGIAMCTEGGILIMEWLIIYGTTWGLLIAVFCEAMVIAYIYG 493

  Fly   509 VDRFSSDVEQMLGSKPGLFWRICWTYISPVFLLTIFIFSIMGYKEMLGEEYYYPDWSYQVGWAVT 573
            :.:|..||::|:|.:||.:|:.||:..:|..||::...:.:.|:.:..::|.||..:..:|....
 Worm   494 LRQFVHDVKEMMGFRPGNYWKFCWSCAAPFILLSMITSNFINYQALTYQDYTYPTAANVIGIIFA 558

  Fly   574 CSSVLCIPMYIIYKFFFASKGGCRQRLQESFQP 606
            .|....||:..||||..|......::.|....|
 Worm   559 LSGASFIPLVGIYKFVNARGNTISEKWQRVTMP 591

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SerTNP_001369117.1 SLC6sbd_SERT-like 74..607 CDD:271388 257/553 (46%)
dat-1NP_499043.1 SLC6sbd_SERT-like_u1 40..591 CDD:271405 256/551 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53371
OrthoDB 1 1.010 - - D250396at2759
OrthoFinder 1 1.000 - - FOG0000975
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_101590
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X639
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
76.730

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