DRSC/TRiP Functional Genomics Resources

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Protein Alignment SerT and snf-5

DIOPT Version :9

Sequence 1:NP_001369117.1 Gene:SerT / 37895 FlyBaseID:FBgn0010414 Length:768 Species:Drosophila melanogaster
Sequence 2:NP_496735.1 Gene:snf-5 / 174923 WormBaseID:WBGene00004904 Length:728 Species:Caenorhabditis elegans


Alignment Length:678 Identity:188/678 - (27%)
Similarity:296/678 - (43%) Gaps:110/678 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MDRSGSSDFAGAAATTGRSNPAPWSDDKESPNNEDDSNEDDG-------DHTTPAKVTDPLAPKL 58
            |..|||::.|     ..|..|:...|....|:.:..|.:.:.       ..:|.:|: ||.....
 Worm     1 MADSGSNEEA-----MKRQAPSVKFDSPSKPDPQQVSQQSNQLSSQKSIQQSTQSKI-DPSRIDT 59

  Fly    59 ANNERILVVSVT-----------ERTRETWGQKAEFLLAVIGFAVDLGNVWRFPYICYQNGGGAF 112
            .|.    .|:.|           |..|:.:|...||:|..:|.||.|||:||||...|.|||.||
 Worm    60 KNT----TVTTTRPTLDTPPEEEEEKRDGFGNSFEFVLTSLGLAVGLGNIWRFPTRAYNNGGSAF 120

  Fly   113 LVPY--CLFLIFGGLPLFYMELALGQFHRCGCLSIWKRICPALKGVGYAICLIDIYMGMYYNTII 175
            |:||  |.||.  |||..|.|...||:.......|::|:.|.|:|||:....:...:.:||..|:
 Worm   121 LIPYLTCAFLF--GLPAVYFEFLTGQYQGKSPPVIFRRVRPILEGVGWMGVFVAALVAIYYIVIV 183

  Fly   176 GWAVYYL-------FASFTSKLPWTSCDNPWNT-ENCMQVTSE---------------------- 210
            .|...|:       ||.      |:.|:|.||. .:|:.:..:                      
 Worm   184 SWISIYMINICRGHFAL------WSHCNNDWNNGTSCITMADQYLCKNHTKVMANSTLWNSSLPI 242

  Fly   211 --------------NFTELATSPAKEFFERKVLESYKGNGLDFMG---PVKPTLALCVFGVFVLV 258
                          |.|:::|: .:::|...:::...|. |||.|   ||...:::|    ::|.
 Worm   243 PDKMVYFNGACQDANGTDVSTA-TEQYFMTYIVQPSSGM-LDFGGFNWPVFAAMSVC----WLLT 301

  Fly   259 YFSLWKGVRSAGKVVWVTALAPYVVLIILLVRGVSLPGADEGIK-YYLTPEWHKLKNSKVWIDAA 322
            ...:.||.:..||:.:|:.|.|||::::|.:.||...|:..|:: |:.||.:.||.....|.:|.
 Worm   302 GLGILKGAKIMGKISYVSVLVPYVLVVVLFINGVFQDGSGVGLEMYFGTPNYTKLYEQDTWTEAL 366

  Fly   323 SQIFFSLGPGFGTLLALSSYNKFNNNCYRDALITSSINCLTSFLAGFVIFSVLGYMAYVQKTSID 387
            .|:.|||..|.|.|::||||:...||.:|||||....:...|.:.|..:|:.|||:|......:.
 Worm   367 KQLCFSLSVGHGGLISLSSYSPKRNNIFRDALIVIIGDTTMSLVGGGAVFATLGYLAKATGQDVK 431

  Fly   388 KVGLEGPGLVFIVYPEAIATMSGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPRVIGRR 452
            .|...|..|.|:|||||:..|.....|..||||||..||..:....::...:.:.|:|||.  |.
 Worm   432 DVVKSGLSLAFVVYPEAMTRMPVPWLWCFIFFLMLFLLGASTEIALVDVFCSCIYDQYPRF--RN 494

  Fly   453 RELFVLLLLAFIFLC-ALPTMTYGGVVLVNFLNVYGPGLAILFVVFVEAAGVFWFYGVDRFSSDV 516
            |:..|::....:..| .|...|..|.......:.|..|.:.:..|..|...:.:.||......|:
 Worm   495 RKWIVVIAWCSVLYCIGLVFSTRAGYYWFEMFDEYAAGFSSVCTVVCELLVMMYIYGFRNVRDDI 559

  Fly   517 EQMLGSKPGLF--------WRIC--WTYISPVFLLTIFIFSIMGYKEMLGEEYYYPDWSYQVGWA 571
            .:::|.....|        |...  |..|||...|.:...|.:.....:|....||......||.
 Worm   560 TEVVGHARNKFTGAIGAHSWYFTANWMVISPSIALILVGLSFVREYPYMGRHDIYPAVFDIFGWF 624

  Fly   572 VTCSSVLCIPMYIIYKFFFASKGGCRQR 599
            ::...|:.:|::::..|.     .||.|
 Worm   625 LSFLPVIIVPIFMLLNFI-----RCRNR 647

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SerTNP_001369117.1 SLC6sbd_SERT-like 74..607 CDD:271388 170/587 (29%)
snf-5NP_496735.1 SLC6sbd 83..601 CDD:271359 157/533 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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