DRSC/TRiP Functional Genomics Resources

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Protein Alignment SerT and mod-5

DIOPT Version :9

Sequence 1:NP_001369117.1 Gene:SerT / 37895 FlyBaseID:FBgn0010414 Length:768 Species:Drosophila melanogaster
Sequence 2:NP_491095.3 Gene:mod-5 / 171879 WormBaseID:WBGene00003387 Length:671 Species:Caenorhabditis elegans


Alignment Length:614 Identity:298/614 - (48%)
Similarity:406/614 - (66%) Gaps:35/614 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 SPNNEDDSNEDDGDHTTPAKVTDPLAPKLANNERILVVSVTERT---RETWGQKAEFLLAVIGFA 91
            |.::..|.||       |......|.|.....    |.::..|:   |:.|..|.||||||:|:|
 Worm    64 STSHSIDPNE-------PIAALGGLTPTKEGR----VAALRRRSSMVRDKWATKMEFLLAVVGYA 117

  Fly    92 VDLGNVWRFPYICYQNGGGAFLVPYCLFLIFGGLPLFYMELALGQFHRCGCLSIWKRICPALKGV 156
            |||||:||||.:||::||||||:||.:.|:.||||:|||||.||||||.||:|||:::||..:|:
 Worm   118 VDLGNIWRFPSVCYKHGGGAFLIPYFIMLMIGGLPMFYMELVLGQFHRSGCVSIWRKVCPLFRGI 182

  Fly   157 GYAICLIDIYMGMYYNTIIGWAVYYLFASFT----SKLPWTSCDNPWNTENC---MQVT-SENFT 213
            ||.||.|..::.::||.||..|||:...|.:    |::||.||.|||||..|   :.|| |.|.|
 Worm   183 GYGICCICTFIAIFYNAIIAQAVYFAIVSLSKIWDSEVPWASCGNPWNTPRCSDDLNVTISRNGT 247

  Fly   214 ELATSPAKEFFERKVLESYKGNGLDFMGPVKPTLALCVFGVFVLVYFSLWKGVRSAGKVVWVTAL 278
            .| |:|::|::..||||..|..|.|.:|.||.::|:|:..||::|||:||||.:|:||:|||||.
 Worm   248 PL-TTPSEEYYLYKVLEVQKSTGFDDLGGVKTSMAVCLLAVFIMVYFALWKGPQSSGKIVWVTAT 311

  Fly   279 APYVVLIILLVRGVSLPGADEGIKYYLTPEWHKLKNSKVWIDAASQIFFSLGPGFGTLLALSSYN 343
            |||::|.|||:||:.||||..|:.||:||::.|||:..||..||:|||||||||||.||||||||
 Worm   312 APYIILSILLIRGLLLPGAKNGLYYYVTPDFEKLKDPAVWSAAATQIFFSLGPGFGVLLALSSYN 376

  Fly   344 KFNNNCYRDALITSSINCLTSFLAGFVIFSVLGYMAYVQKTSIDK-VGLEGPGLVFIVYPEAIAT 407
            .|||||||||:.||.|||.|||.:|.|:||.||||:.:....|:: ||.....|:|||||:|:||
 Worm   377 DFNNNCYRDAVTTSIINCATSFFSGCVVFSTLGYMSLLTNKPINEVVGEHDASLIFIVYPQALAT 441

  Fly   408 MSGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPRVIGRRRELFVLLLLAFIFLCALPTM 472
            |..|.|||.|||:||||||:||||.|:||.||..||| .|.:.:.|:.|||::....:..:.|.:
 Worm   442 MDYSCFWSFIFFVMLITLGIDSTFAGIEAFITGFCDE-SRFLSKNRKWFVLVICIIYYFLSFPAI 505

  Fly   473 TYGGVVLVNFLNVYGPGLAILFVVFVEAAGVFWFYGVDRFSSDVEQMLGSKPGLFWRICWTYISP 537
            :|||..::.||:.||..|::||:|..|...|.||||||:||.|:..|||..||::||:||| .||
 Worm   506 SYGGQFVIPFLDEYGVSLSVLFIVTCEMIAVCWFYGVDQFSKDIRAMLGFYPGIYWRVCWT-CSP 569

  Fly   538 VFLLTIFIFSI--MGYKEMLGEEYYYPDWSYQVGWAVTCSSVLCIPMYIIYKFFFASKGGCRQRL 600
            ||:..|||.::  ..:|.:....|.:|.||..:||.:...|||.||::.|. :..:..|...:|.
 Worm   570 VFISVIFIMTVYNSSFKPIQMASYTFPWWSVILGWFLRLLSVLAIPVFAII-YLLSGTGTLYERF 633

  Fly   601 QESFQPEDNCGSVVPGQQGTSVXHDHAQV 629
            :.:..|:....|      .||:..|..|:
 Worm   634 RWAITPQQRRNS------ATSLAADPTQI 656

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SerTNP_001369117.1 SLC6sbd_SERT-like 74..607 CDD:271388 283/543 (52%)
mod-5NP_491095.3 SLC6sbd_SERT-like 100..639 CDD:271388 283/542 (52%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 591 1.000 Domainoid score I101
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H99955
Inparanoid 1 1.050 594 1.000 Inparanoid score I527
Isobase 1 0.950 - 0 Normalized mean entropy S2944
OMA 1 1.010 - - QHG53371
OrthoDB 1 1.010 - - D250396at2759
OrthoFinder 1 1.000 - - FOG0000975
OrthoInspector 1 1.000 - - oto19424
orthoMCL 1 0.900 - - OOG6_101590
Panther 1 1.100 - - LDO PTHR11616
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4270
SonicParanoid 1 1.000 - - X639
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1615.820

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