DRSC/TRiP Functional Genomics Resources

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Protein Alignment SerT and Slc6a13

DIOPT Version :9

Sequence 1:NP_001369117.1 Gene:SerT / 37895 FlyBaseID:FBgn0010414 Length:768 Species:Drosophila melanogaster
Sequence 2:XP_006237280.2 Gene:Slc6a13 / 171163 RGDID:620788 Length:608 Species:Rattus norvegicus


Alignment Length:584 Identity:249/584 - (42%)
Similarity:364/584 - (62%) Gaps:31/584 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    45 TTPAKVTDPLAPKLANNERILVVSVTERTRETWGQKAEFLLAVIGFAVDLGNVWRFPYICYQNGG 109
            ||....|.|:.|.:   |::......|  ||.|..|.||:|:|.|..:.|||||||||:||:|||
  Rat     8 TTSNGETKPVCPVM---EKVEEDGTLE--REQWTNKMEFVLSVAGEIIGLGNVWRFPYLCYKNGG 67

  Fly   110 GAFLVPYCLFLIFGGLPLFYMELALGQFHRCGCLSIWKRICPALK------GVGYAICLIDIYMG 168
            |||.:||.:||...|:|:|::|.||||:...|.::.|::|||..:      |:|||..:|...:.
  Rat    68 GAFFIPYLIFLFTCGIPVFFLETALGQYTNQGGITAWRKICPIFEASVPSPGIGYASQMIVSLLN 132

  Fly   169 MYYNTIIGWAVYYLFASFTSKLPWTSCDNPWNTENCMQ---------VTSENFTELATSPAKEFF 224
            :||..::.||::|||:|||:.|||.||.:.||||||::         |||||    ||||..||:
  Rat   133 VYYIVVLAWALFYLFSSFTTDLPWGSCSHEWNTENCVEFQKTNNSLNVTSEN----ATSPVIEFW 193

  Fly   225 ERKVLESYKGNGLDFMGPVKPTLALCVFGVFVLVYFSLWKGVRSAGKVVWVTALAPYVVLIILLV 289
            ||:||:.  .:|:..:|.::..|.||:...:::.||.:||||:|.||||:.||..||::|::||:
  Rat   194 ERRVLKI--SDGIQHLGSLRWELVLCLLLAWIICYFCIWKGVKSTGKVVYFTATFPYLMLVVLLI 256

  Fly   290 RGVSLPGADEGIKYYLTPEWHKLKNSKVWIDAASQIFFSLGPGFGTLLALSSYNKFNNNCYRDAL 354
            |||:||||.:||::||.|...:|.:.:||:||.:|||||.....|.|.||.||||::||||||.:
  Rat   257 RGVTLPGAAQGIQFYLYPNITRLWDPQVWMDAGTQIFFSFAICLGCLTALGSYNKYHNNCYRDCV 321

  Fly   355 ITSSINCLTSFLAGFVIFSVLGYMAYVQKTSIDKVGLEGPGLVFIVYPEAIATMSGSVFWSIIFF 419
            ....:|..|||:|||.|||:||:|:..|...|.:|...||||.||.||.|:..:..|..|:..||
  Rat   322 ALCILNSSTSFVAGFAIFSILGFMSQEQGVPISEVAESGPGLAFIAYPRAVVMLPFSPLWACCFF 386

  Fly   420 LMLITLGLDSTFGGLEAMITALCDEYPRVIGR--RRELFVLLLLAFIFLCALPTMTYGGVVLVNF 482
            .|::.|||||.|..:|:::|||.|.||||..:  |||:.:|::....|...|..:|.||:.:...
  Rat   387 FMVVLLGLDSQFVCVESLVTALVDMYPRVFRKKNRREILILIVSVVSFFIGLIMLTEGGMYVFQL 451

  Fly   483 LNVY-GPGLAILFVVFVEAAGVFWFYGVDRFSSDVEQMLGSKPGLFWRICWTYISPVFLLTIFIF 546
            .:.| ..|:.:|||...|:..|.|.||..||..::|.|:|.||....:.||.:.:|...|..|:|
  Rat   452 FDYYAASGMCLLFVAIFESLCVAWVYGASRFYDNIEDMIGYKPWPLIKYCWLFFTPAVCLATFLF 516

  Fly   547 SIMGYKEM-LGEEYYYPDWSYQVGWAVTCSSVLCIPMYIIYKFFFASKGGCRQRLQESFQPEDN 609
            |::.|..: ..::|.||.|...:||.:..||::|||.:.||| ....||..|:||::...|.::
  Rat   517 SLIKYTPLTYNKKYTYPWWGDALGWLLALSSMVCIPAWSIYK-LRTLKGPLRERLRQLVCPAED 579

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SerTNP_001369117.1 SLC6sbd_SERT-like 74..607 CDD:271388 241/551 (44%)
Slc6a13XP_006237280.2 SLC5-6-like_sbd 32..581 CDD:382020 242/555 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53371
OrthoDB 1 1.010 - - D250396at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.830

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