DRSC/TRiP Functional Genomics Resources

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Protein Alignment SerT and Slc6a9

DIOPT Version :9

Sequence 1:NP_001369117.1 Gene:SerT / 37895 FlyBaseID:FBgn0010414 Length:768 Species:Drosophila melanogaster
Sequence 2:XP_006238687.1 Gene:Slc6a9 / 116509 RGDID:621243 Length:638 Species:Rattus norvegicus


Alignment Length:567 Identity:242/567 - (42%)
Similarity:348/567 - (61%) Gaps:38/567 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    73 TRETWGQKAEFLLAVIGFAVDLGNVWRFPYICYQNGGGAFLVPYCLFLIFGGLPLFYMELALGQF 137
            ||..||.:.||:|..:|:||.|||||||||:||:||||||:.||.:.|:|.|:|||:|||:.|||
  Rat    31 TRGNWGNQIEFVLTSVGYAVGLGNVWRFPYLCYRNGGGAFMFPYFIMLVFCGIPLFFMELSFGQF 95

  Fly   138 HRCGCLSIWKRICPALKGVGYAICLIDIYMGMYYNTIIGWAVYYLFASFTSKLPWTSCDNPWNTE 202
            ...|||.:| ||.|..|||||.:.::..|:|:|||.:|..|.||.|:|.|..|||..|:|||||.
  Rat    96 ASQGCLGVW-RISPMFKGVGYGMMVVSTYIGIYYNVVICIAFYYFFSSMTHVLPWAYCNNPWNTP 159

  Fly   203 NCMQVTSE--------------------NFTELATSPAKEFFERKVLESYKGNGLDFMGPVKPTL 247
            :|..|...                    |:|...|||::|::...||:.....| || |.|:..|
  Rat   160 DCAGVLDASNLTNGSRPTALSGNLSHLFNYTLQRTSPSEEYWRLYVLKLSDDIG-DF-GEVRLPL 222

  Fly   248 ALCVFGVFVLVYFSLWKGVRSAGKVVWVTALAPYVVLIILLVRGVSLPGADEGIKYYLTPEWHKL 312
            ..|:...:|:|:..|.:||:|:||||:.||..|||||.||.||||:|.||..||.|||||:|.|:
  Rat   223 LGCLGVSWVVVFLCLIRGVKSSGKVVYFTATFPYVVLTILFVRGVTLEGAFTGIMYYLTPKWDKI 287

  Fly   313 KNSKVWIDAASQIFFSLGPGFGTLLALSSYNKFNNNCYRDALITSSINCLTSFLAGFVIFSVLGY 377
            ..:|||.|||||||:|||..:|.|:.::|||||:||||||::|.|..||.||..|||||||:||:
  Rat   288 LEAKVWGDAASQIFYSLGCAWGGLITMASYNKFHNNCYRDSVIISITNCATSVYAGFVIFSILGF 352

  Fly   378 MAYVQKTSIDKVGLEGPGLVFIVYPEAIATMSGSVFWSIIFFLMLITLGLDSTFGGLEAMITALC 442
            ||......:.:|...||||.|:.||||:..:..|..||::||.|||.|||.:.|..||.::||:.
  Rat   353 MANHLGVDVSRVADHGPGLAFVAYPEALTLLPISPLWSLLFFFMLILLGLGTQFCLLETLVTAIV 417

  Fly   443 DEYPRVIGRRRELFVLLLLAFI-FLCALPTMTYGGVVLVNFLNVYGPGLAILFVVFVEAAGVFWF 506
            ||.......:::.:|.|.:|.. ||..:|..:..|:..:..::.|....:::.:..:....:.:.
  Rat   418 DEVGNEWILQKKTYVTLGVAVAGFLLGIPLTSQAGIYWLLLMDNYAASFSLVVISCIMCVSIMYI 482

  Fly   507 YGVDRFSSDVEQMLGSKPGLFWRICWTYISPVFLLTIFIFSIMGYKEMLGEEYYYPDWSYQVGWA 571
            ||...:..|::.|||..|.||::|||.::||..:..|.||:::.|:.:....|.||.|:..:|:.
  Rat   483 YGHRNYFQDIQMMLGFPPPLFFQICWRFVSPTIIFFILIFTVIQYRPITYNHYQYPGWAVAIGFL 547

  Fly   572 VTCSSVLCIPMYIIYKFFFASKGGCR-------QRLQESFQPEDNCG 611
            :..|||:|||:|.:::.       ||       |||:.:.:|..:.|
  Rat   548 MALSSVICIPLYALFQL-------CRTDGDTLLQRLKNATKPSRDWG 587

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SerTNP_001369117.1 SLC6sbd_SERT-like 74..607 CDD:271388 239/560 (43%)
Slc6a9XP_006238687.1 SLC6sbd_GlyT1 16..599 CDD:212067 242/567 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D250396at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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