DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SerT and slc6a12

DIOPT Version :9

Sequence 1:NP_001369117.1 Gene:SerT / 37895 FlyBaseID:FBgn0010414 Length:768 Species:Drosophila melanogaster
Sequence 2:XP_031754510.1 Gene:slc6a12 / 100492029 XenbaseID:XB-GENE-6033368 Length:612 Species:Xenopus tropicalis


Alignment Length:595 Identity:260/595 - (43%)
Similarity:369/595 - (62%) Gaps:37/595 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 WSDDKESPNNEDDSNE----DDGDHTTPAKVTDPLAPKLANNERILVVSVTERTRETWGQKAEFL 84
            |.|.::..|....|:.    .:|.|..| ::.|                     |..|..|.||:
 Frog     3 WKDCEKPRNGAGGSDTLCALGEGRHREP-EIED---------------------RGQWSNKVEFV 45

  Fly    85 LAVIGFAVDLGNVWRFPYICYQNGGGAFLVPYCLFLIFGGLPLFYMELALGQFHRCGCLSIWKRI 149
            |:|.|..:.|||||||||:||:||||||.:||.:||...|:|:|::|.||||:...|.::.|::|
 Frog    46 LSVAGEIIGLGNVWRFPYLCYKNGGGAFFIPYLIFLFTCGIPVFFLETALGQYTSQGGITAWRKI 110

  Fly   150 CPALKGVGYAICLIDIYMGMYYNTIIGWAVYYLFASFTSKLPWTSCDNPWNTENCMQVT--SENF 212
            ||..:|:|||..:|:.|:.:||..|:.||::|||:|||::|||.:|:|.||||:|:...  ||||
 Frog   111 CPLFEGIGYASQVIEGYLNIYYIVILAWALFYLFSSFTAELPWATCNNTWNTEHCIDFVGKSENF 175

  Fly   213 TEL--ATSPAKEFFERKVLESYKGNGLDFMGPVKPTLALCVFGVFVLVYFSLWKGVRSAGKVVWV 275
            |.|  :||...||:||:||  :...|::.:|.|:..||||:...:::.||.:||||:|.||||:.
 Frog   176 TSLENSTSSVVEFWERRVL--HLSEGIEHLGNVRWDLALCLLLAWIICYFCIWKGVKSTGKVVYF 238

  Fly   276 TALAPYVVLIILLVRGVSLPGADEGIKYYLTPEWHKLKNSKVWIDAASQIFFSLGPGFGTLLALS 340
            ||..|||:|||||||||:||||.|||.:||.|:..:|::.:||:||.:|||||.....|.|.||.
 Frog   239 TATFPYVMLIILLVRGVTLPGAYEGIIFYLKPDMTRLQDPQVWMDAGTQIFFSYAICQGCLTALG 303

  Fly   341 SYNKFNNNCYRDALITSSINCLTSFLAGFVIFSVLGYMAYVQKTSIDKVGLEGPGLVFIVYPEAI 405
            ||||:|||||||.:....:|.:|||:|||.||||||:||..|...|.:|...||||.||.||:|:
 Frog   304 SYNKYNNNCYRDCIALCFLNSITSFVAGFAIFSVLGFMAQEQGVPISEVAESGPGLAFIAYPKAV 368

  Fly   406 ATMSGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPRVIGR--RRELFVLLLLAFIFLCA 468
            ..|..|..||.:||||||.|||||.|..:|:::||:.|.:|.|..:  |||.|:|.:....:|..
 Frog   369 TMMPVSPLWSCLFFLMLIFLGLDSQFVCVESLVTAIVDMFPHVFRKKYRREFFILAVAVICYLLG 433

  Fly   469 LPTMTYGGVVLVNFLNVY-GPGLAILFVVFVEAAGVFWFYGVDRFSSDVEQMLGSKPGLFWRICW 532
            |..:|.||:.:....:.| ..|..:|||...|...|.:.||.:||..::|.|:|.:|....:.||
 Frog   434 LILLTEGGMYVFQLFDYYAASGTCLLFVAIFEVICVGYVYGANRFYDNIEDMIGYRPWPLVKYCW 498

  Fly   533 TYISPVFLLTIFIFSIMGYKEM-LGEEYYYPDWSYQVGWAVTCSSVLCIPMYIIYKFFFASKGGC 596
            .:.:|...|..|:||::.|..: ....|.||.|.|.:||.:..||::|||:|..| ....:||..
 Frog   499 LFATPAVCLGTFLFSLIKYSPLKYNNRYVYPSWGYAIGWLMALSSMICIPIYAFY-IILRTKGSF 562

  Fly   597 RQRLQESFQP 606
            .|||::...|
 Frog   563 TQRLKQLVTP 572

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SerTNP_001369117.1 SLC6sbd_SERT-like 74..607 CDD:271388 252/541 (47%)
slc6a12XP_031754510.1 SLC5-6-like_sbd 34..572 CDD:382020 252/561 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D250396at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
22.010

Return to query results.
Submit another query.