DRSC/TRiP Functional Genomics Resources

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Protein Alignment SerT and slc6a8

DIOPT Version :9

Sequence 1:NP_001369117.1 Gene:SerT / 37895 FlyBaseID:FBgn0010414 Length:768 Species:Drosophila melanogaster
Sequence 2:XP_002935539.1 Gene:slc6a8 / 100489909 XenbaseID:XB-GENE-986840 Length:644 Species:Xenopus tropicalis


Alignment Length:554 Identity:255/554 - (46%)
Similarity:355/554 - (64%) Gaps:25/554 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    74 RETWGQKAEFLLAVIGFAVDLGNVWRFPYICYQNGGGAFLVPYCLFLIFGGLPLFYMELALGQFH 138
            |:||..:.:|:::.:||||.|||||||||:||:||||.||:||.|..|.||:|:|::|:|||||.
 Frog    58 RDTWTSQMDFIMSCVGFAVGLGNVWRFPYLCYKNGGGVFLIPYILIAILGGIPIFFLEIALGQFM 122

  Fly   139 RCGCLSIWKRICPALKGVGYAICLIDIYMGMYYNTIIGWAVYYLFASFTSKLPWTSCDNPWNTEN 203
            :.|.:::| .|.|..:|:|:|..:|..:...||..|:.|.||||..||::.|||:.|:|.||:.:
 Frog   123 KAGSIAVW-NIAPLFQGIGFASVVIVFFCNTYYILILTWGVYYLVKSFSAVLPWSHCNNTWNSPD 186

  Fly   204 CMQV-------------TSENFT--ELA--TSPAKEFFERKVLESYKGNGLDFMGPVKPTLALCV 251
            |:.:             |..|.|  |||  .||..||:|:|||.  ..:|||.:|.:...|.||:
 Frog   187 CVDIFRQEDCTNGTANSTFGNLTCNELADKVSPITEFWEKKVLR--LSSGLDDIGSINWELLLCL 249

  Fly   252 FGVFVLVYFSLWKGVRSAGKVVWVTALAPYVVLIILLVRGVSLPGADEGIKYYLTPEWHKLKNSK 316
            .|.::||||.:||||:|.||:|:.||..|||||:||||||..||||.|||.|||.|:|.||..::
 Frog   250 IGCWLLVYFCVWKGVKSTGKIVYFTATFPYVVLLILLVRGAMLPGATEGIIYYLKPDWSKLGTAQ 314

  Fly   317 VWIDAASQIFFSLGPGFGTLLALSSYNKFNNNCYRDALITSSINCLTSFLAGFVIFSVLGYMAYV 381
            |||||.:|||||...|.|.|.||.|||:|||:||:||.|.:.||..|||.||||:||:||:||..
 Frog   315 VWIDAGTQIFFSYAIGLGALTALGSYNRFNNDCYKDAFILAVINSGTSFFAGFVVFSILGFMANE 379

  Fly   382 QKTSIDKVGLEGPGLVFIVYPEAIATMSGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYP 446
            |...|.||...||||.||.||.|::.|..:..||.:||.||:.|||||.|.|:|.:|||:.|..|
 Frog   380 QGVDISKVAESGPGLAFIAYPRAVSLMPVAPLWSALFFFMLLLLGLDSQFVGVEGLITAILDLLP 444

  Fly   447 -RVIGR-RRELFVLLLLAFIFLCALPTMTYGGVVLVNFLNVY-GPGLAILFVVFVEAAGVFWFYG 508
             |...| :||:.|.:..|.:||..|..:|.||:.:....:.| ..|:.:|:..|.:...|.|.||
 Frog   445 ARYYFRFQREIAVAICCAIMFLIDLSMLTEGGMYVFQLFDYYSASGMTLLWQTFWQCVVVAWVYG 509

  Fly   509 VDRFSSDVEQMLGSKPGLFWRICWTYISPVFLLTIFIFSIMGYKEM-LGEEYYYPDWSYQVGWAV 572
            .|||..|:.:|:|.:|..:.:.||::::|...:.||:|:::.||.: ....|.||.|...:||..
 Frog   510 ADRFMDDIARMIGYRPFPWMKWCWSFVTPFVCMAIFLFNLINYKPLTYNNSYTYPWWGEAIGWGF 574

  Fly   573 TCSSVLCIPMYIIYKFFFASKGGCRQRLQESFQP 606
            ..||:||:|:..:||...| ||..|:|.|...:|
 Frog   575 ALSSMLCVPVTFLYKITCA-KGSLRERWQHLTKP 607

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SerTNP_001369117.1 SLC6sbd_SERT-like 74..607 CDD:271388 255/554 (46%)
slc6a8XP_002935539.1 SLC5-6-like_sbd 58..644 CDD:382020 255/554 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D250396at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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