DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SerT and slc6a3

DIOPT Version :9

Sequence 1:NP_001369117.1 Gene:SerT / 37895 FlyBaseID:FBgn0010414 Length:768 Species:Drosophila melanogaster
Sequence 2:XP_002933174.1 Gene:slc6a3 / 100488824 XenbaseID:XB-GENE-982873 Length:621 Species:Xenopus tropicalis


Alignment Length:588 Identity:297/588 - (50%)
Similarity:401/588 - (68%) Gaps:32/588 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    47 PAKVTDPLAPKLANNERILV------------------VSVTERTRETWGQKAEFLLAVIGFAVD 93
            |||.::.:.||  ..|.|||                  ::.....||||.:|.:|||:|||||||
 Frog    17 PAKESNTMGPK--EVELILVKEQNGVQFTNSALVSPSQINTENGERETWSKKIDFLLSVIGFAVD 79

  Fly    94 LGNVWRFPYICYQNGGGAFLVPYCLFLIFGGLPLFYMELALGQFHRCGCLSIWKRICPALKGVGY 158
            |.|||||||:||:||||||||||..|::..|:||||||||||||:|.|...:|| |||..|||||
 Frog    80 LANVWRFPYLCYKNGGGAFLVPYIFFMVIAGMPLFYMELALGQFNREGAAGVWK-ICPIFKGVGY 143

  Fly   159 AICLIDIYMGMYYNTIIGWAVYYLFASFTSKLPWTSCDNPWNTENCMQVTSENFTELA------- 216
            .:.||.:|:|.:||.||.||:.|||:||||:|||..|:|.||:.||.:....||::.:       
 Frog   144 TVILISLYVGFFYNVIIAWALQYLFSSFTSELPWIHCNNSWNSPNCSETKYSNFSDYSLFGLNDT 208

  Fly   217 --TSPAKEFFERKVLESYKGNGLDFMGPVKPTLALCVFGVFVLVYFSLWKGVRSAGKVVWVTALA 279
              .:||.|:|||.||..::..|:..:|..:..|..|:..|.|.:||||||||:::|||||:||..
 Frog   209 YKVTPAAEYFERGVLHLHESQGIHDLGSPRWKLTSCLIVVIVFLYFSLWKGVKTSGKVVWITATM 273

  Fly   280 PYVVLIILLVRGVSLPGADEGIKYYLTPEWHKLKNSKVWIDAASQIFFSLGPGFGTLLALSSYNK 344
            |||||..||:|||:||||.:|||.||:.::.:|..:.||||||:||.||||.|||.|:|.|||||
 Frog   274 PYVVLTALLLRGVTLPGAIDGIKAYLSVDFLRLCEASVWIDAATQICFSLGVGFGVLIAFSSYNK 338

  Fly   345 FNNNCYRDALITSSINCLTSFLAGFVIFSVLGYMAYVQKTSIDKVGLEGPGLVFIVYPEAIATMS 409
            |.|||||||:||:|:|.||||.:||||||.|||||......|..|..:||||:||:|||||||:.
 Frog   339 FTNNCYRDAIITTSVNSLTSFFSGFVIFSFLGYMAQKHNVPIGDVAKDGPGLIFIIYPEAIATLP 403

  Fly   410 GSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPRVIGRRRELFVLLLLAFIFLCALPTMTY 474
            .|..||:|||:||:|||:||..||:|::||.|.||: :.:.|.||||.|.::...|..:|..:|.
 Frog   404 LSSVWSVIFFIMLLTLGIDSAMGGMESVITGLIDEF-KFLRRHRELFTLFIVLCTFFTSLSCVTN 467

  Fly   475 GGVVLVNFLNVYGPGLAILFVVFVEAAGVFWFYGVDRFSSDVEQMLGSKPGLFWRICWTYISPVF 539
            ||:.:...|:.:..|.:|||.|.:||.|:.|||||.|||.|:|:|:|.:|||:||:||.::||.|
 Frog   468 GGIYVFTLLDHFAAGTSILFGVLIEAIGIAWFYGVGRFSDDIEEMIGKRPGLYWRLCWKFVSPCF 532

  Fly   540 LLTIFIFSIMGYKEMLGEEYYYPDWSYQVGWAVTCSSVLCIPMYIIYKFFFASKGGCRQRLQESF 604
            ||.:.:.||:.|:......|.:|:|:..:||.|..||:..:|:|.||| |.:..|..|:::..:.
 Frog   533 LLFVVVVSIVTYRSPKYGNYTFPEWANVIGWLVAISSMAMVPLYAIYK-FSSLHGSFREKIAYAI 596

  Fly   605 QPE 607
            .||
 Frog   597 TPE 599

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SerTNP_001369117.1 SLC6sbd_SERT-like 74..607 CDD:271388 286/541 (53%)
slc6a3XP_002933174.1 SLC6sbd_DAT1 60..615 CDD:212083 288/543 (53%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D250396at2759
OrthoFinder 1 1.000 - - FOG0000975
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X639
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.010

Return to query results.
Submit another query.