DRSC/TRiP Functional Genomics Resources

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Protein Alignment SerT and slc6a2

DIOPT Version :9

Sequence 1:NP_001369117.1 Gene:SerT / 37895 FlyBaseID:FBgn0010414 Length:768 Species:Drosophila melanogaster
Sequence 2:XP_017948962.2 Gene:slc6a2 / 100486589 XenbaseID:XB-GENE-486549 Length:624 Species:Xenopus tropicalis


Alignment Length:609 Identity:306/609 - (50%)
Similarity:430/609 - (70%) Gaps:26/609 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 SDDKES---PNNEDDS----NEDDG-DHTTPAKVTDPLAPKLANNERILVVSVTERTRETWGQKA 81
            ||.|.|   |..:|..    .|.:| .:|:...:...|:|:..      |....::.||.||:|.
 Frog    12 SDHKLSAVAPEKKDVELILVKEQNGVQYTSSTVIVPDLSPQYE------VPGEGQQEREQWGKKI 70

  Fly    82 EFLLAVIGFAVDLGNVWRFPYICYQNGGGAFLVPYCLFLIFGGLPLFYMELALGQFHRCGCLSIW 146
            :|||:|:||:|||.||||||::||:|||||||:||.||||..|:|||||||||||::|.|..::|
 Frog    71 DFLLSVVGFSVDLANVWRFPFLCYKNGGGAFLIPYTLFLIIAGMPLFYMELALGQYNREGAATVW 135

  Fly   147 KRICPALKGVGYAICLIDIYMGMYYNTIIGWAVYYLFASFTSKLPWTSCDNPWNTENC------- 204
            | |||..|||||.:.||.:|:|.|||.||.|::|||.:||||:|||..|.|.||:.||       
 Frog   136 K-ICPLFKGVGYTVILIALYVGFYYNVIIAWSLYYLVSSFTSELPWIKCGNEWNSLNCTDPMLLN 199

  Fly   205 MQVTSEN--FTELATSPAKEFFERKVLESYKGNGLDFMGPVKPTLALCVFGVFVLVYFSLWKGVR 267
            |.:.|.|  :::..|:||.||:||.||..::.||:..:|..:..|.:|:..|.::::|||||||:
 Frog   200 MSMISYNTKYSKFKTTPAAEFYERGVLHLHESNGIHDLGQPRWQLTICLIVVLIVLFFSLWKGVK 264

  Fly   268 SAGKVVWVTALAPYVVLIILLVRGVSLPGADEGIKYYLTPEWHKLKNSKVWIDAASQIFFSLGPG 332
            ::|||||:||..|||||.:||:||::|||:.:||..||..:..:|.::.||||||:|||:|||.|
 Frog   265 TSGKVVWITATLPYVVLFVLLIRGITLPGSSKGISAYLHIDIKRLTDASVWIDAATQIFYSLGAG 329

  Fly   333 FGTLLALSSYNKFNNNCYRDALITSSINCLTSFLAGFVIFSVLGYMAYVQKTSIDKVGLEGPGLV 397
            ||.|:|.:|||||:||||||||:||:|||:|||::||.|||:|||||:....:|:.|..||.|||
 Frog   330 FGVLIAFASYNKFDNNCYRDALMTSTINCVTSFISGFAIFSILGYMAHKHNVNIEDVATEGAGLV 394

  Fly   398 FIVYPEAIATMSGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPRVIGRRRELFVLLLLA 462
            ||:|||||:|::||.||:::||:||:|||:||..||:||:||.|.|:. .::.|.|:||.||:..
 Frog   395 FIIYPEAISTLAGSTFWAVVFFIMLLTLGIDSAMGGMEAVITGLADDI-SILKRHRKLFTLLVAF 458

  Fly   463 FIFLCALPTMTYGGVVLVNFLNVYGPGLAILFVVFVEAAGVFWFYGVDRFSSDVEQMLGSKPGLF 527
            ..|:.||..:|.||:.::..|:.:..|.:|||.|.:||.||.|||||||||.|:.:|||.:|||:
 Frog   459 ITFIFALLCITNGGIYVLTLLDTFAAGTSILFAVLIEAIGVSWFYGVDRFSEDIHRMLGFRPGLY 523

  Fly   528 WRICWTYISPVFLLTIFIFSIMGYKEMLGEEYYYPDWSYQVGWAVTCSSVLCIPMYIIYKFFFAS 592
            ||:||.::||.|||.:.|.||:.||.::.:||.:|.|:.:.|||:..||:..:|:||||| |...
 Frog   524 WRLCWKFVSPAFLLFVVIVSIVTYKPLMYDEYKFPPWANRTGWAIALSSMTLVPIYIIYK-FLTM 587

  Fly   593 KGGCRQRLQESFQPEDNCGSVVPG 616
            :|..|:||.....||:....|..|
 Frog   588 RGSLRERLAYCITPENEHHLVAQG 611

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SerTNP_001369117.1 SLC6sbd_SERT-like 74..607 CDD:271388 290/541 (54%)
slc6a2XP_017948962.2 SLC5-6-like_sbd 63..622 CDD:382020 294/552 (53%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D250396at2759
OrthoFinder 1 1.000 - - FOG0000975
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X639
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.010

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