DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpn8 and psmd14

DIOPT Version :9

Sequence 1:NP_001261167.1 Gene:Rpn8 / 37894 FlyBaseID:FBgn0002787 Length:358 Species:Drosophila melanogaster
Sequence 2:NP_001025636.1 Gene:psmd14 / 595024 XenbaseID:XB-GENE-950703 Length:310 Species:Xenopus tropicalis


Alignment Length:316 Identity:67/316 - (21%)
Similarity:119/316 - (37%) Gaps:71/316 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 SVNKVIVHPLVLLSVVDHFNRMGKIGNQKRVVGVLLGCWRSKGVLDVSNSFAVPFDEDDKDKSVW 71
            :..:|.:..|.||.::.|    |:.|....|:|::||.:.....:.|.:.||:|  :.....||.
 Frog    27 TAEQVYISSLALLKMLKH----GRAGVPMEVMGLMLGEFVDDYTVRVIDVFAMP--QSGTGVSVE 85

  Fly    72 FLDHDYLENMYGMFKKVNARERVVGWYHTGPK----LHQNDIAINELVRRYCPNSVLVIIDAKPK 132
            .:|..:...|..|.|:....|.||||||:.|.    |...||...:........:|.|::|    
 Frog    86 AVDPVFQAKMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVD---- 146

  Fly   133 DLGLPTEAYISVEEVHDDGSPTSKTFEHVPSE---IGAEEAEEVGVEHLLRDIKDTTVGSLSQKI 194
                |.:   ||:     |......|..:.:.   :|.|..:..           :.:|.|::..
 Frog   147 ----PIQ---SVK-----GKVVIDAFRLINANMMVLGHEPRQTT-----------SNLGHLNKPS 188

  Fly   195 TNQLMGLKGLNAQLRDIK-QYLQRVGDSKMPIN-HQIVYQLQDIFNLLPDITNDQFTGTMYVKTN 257
            ...|  :.|||.....|. .|.:...:.||.:| |:..:        :..:|...:  :.:.|.|
 Frog   189 IQAL--IHGLNRHYYSITINYRKNELEQKMLLNLHKKSW--------MEGLTLQNY--SEHCKLN 241

  Fly   258 DQMLVVYLASMVRSIIALHNLINNKLANRD---------AEEGKSDSKEAKEKNKD 304
            :        ::|:.::.|....|..:...|         ...||.|.|...|::.|
 Frog   242 E--------TVVKEMLELAKNYNKAVEEEDKMTPEQLAIKNVGKQDPKRHLEEHVD 289

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpn8NP_001261167.1 PLN03246 7..308 CDD:215645 67/316 (21%)
MPN_RPN7_8 9..290 CDD:163693 61/298 (20%)
psmd14NP_001025636.1 MPN_RPN11_CSN5 21..286 CDD:163700 65/311 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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