DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpn8 and psmd7

DIOPT Version :9

Sequence 1:NP_001261167.1 Gene:Rpn8 / 37894 FlyBaseID:FBgn0002787 Length:358 Species:Drosophila melanogaster
Sequence 2:NP_001032349.1 Gene:psmd7 / 447971 XenbaseID:XB-GENE-1005422 Length:320 Species:Xenopus tropicalis


Alignment Length:327 Identity:247/327 - (75%)
Similarity:289/327 - (88%) Gaps:8/327 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MPSQEVSVNKVIVHPLVLLSVVDHFNRMGKIGNQKRVVGVLLGCWRSKGVLDVSNSFAVPFDEDD 65
            ||  |::|::|:|||||||||||||||:||:||||||||||||.|..| :|||||||||||||||
 Frog     1 MP--ELAVDRVVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGSWHKK-ILDVSNSFAVPFDEDD 62

  Fly    66 KDKSVWFLDHDYLENMYGMFKKVNARERVVGWYHTGPKLHQNDIAINELVRRYCPNSVLVIIDAK 130
            ||.|||||||||||||||||||||||||:|||||||||||:||||||||::||||||||||||.|
 Frog    63 KDDSVWFLDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSVLVIIDVK 127

  Fly   131 PKDLGLPTEAYISVEEVHDDGSPTSKTFEHVPSEIGAEEAEEVGVEHLLRDIKDTTVGSLSQKIT 195
            |||||||||||||||||||||:|||||||||.||||||||||||||||||||||||||:|||:||
 Frog   128 PKDLGLPTEAYISVEEVHDDGTPTSKTFEHVTSEIGAEEAEEVGVEHLLRDIKDTTVGTLSQRIT 192

  Fly   196 NQLMGLKGLNAQLRDIKQYLQRVGDSKMPINHQIVYQLQDIFNLLPDITNDQFTGTMYVKTNDQM 260
            ||:.||||||::|.||:.||::|...|:||||||:|||||:||||||:...:|....|:||||||
 Frog   193 NQVHGLKGLNSKLLDIRSYLEKVSSGKLPINHQIIYQLQDVFNLLPDVNLQEFVKAFYLKTNDQM 257

  Fly   261 LVVYLASMVRSIIALHNLINNKLANRDAEEGKSDSKEAKEKNKDSKDKDNKETKDKDGKKAEEKA 325
            |||||||::||::|||||||||:||||||:     ||.:||.:..|::.:::.|:|...|.|||.
 Frog   258 LVVYLASLIRSVVALHNLINNKIANRDAEK-----KEGQEKEESKKERKDEKEKEKSEAKKEEKK 317

  Fly   326 DK 327
            :|
 Frog   318 EK 319

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpn8NP_001261167.1 PLN03246 7..308 CDD:215645 237/300 (79%)
MPN_RPN7_8 9..290 CDD:163693 230/280 (82%)
psmd7NP_001032349.1 MPN_RPN7_8 7..285 CDD:163693 228/278 (82%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 217 1.000 Domainoid score I2631
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H2104
Inparanoid 1 1.050 512 1.000 Inparanoid score I1280
OMA 1 1.010 - - QHG53821
OrthoDB 1 1.010 - - D1275837at2759
OrthoFinder 1 1.000 - - FOG0003980
OrthoInspector 1 1.000 - - oto102974
Panther 1 1.100 - - LDO PTHR10540
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1207
SonicParanoid 1 1.000 - - X2737
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1212.110

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