DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpn8 and Eif3f

DIOPT Version :9

Sequence 1:NP_001261167.1 Gene:Rpn8 / 37894 FlyBaseID:FBgn0002787 Length:358 Species:Drosophila melanogaster
Sequence 2:NP_001264231.1 Gene:Eif3f / 293427 RGDID:1306112 Length:361 Species:Rattus norvegicus


Alignment Length:281 Identity:78/281 - (27%)
Similarity:146/281 - (51%) Gaps:22/281 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 VIVHPLVLLSVVDHFNRMGKIGNQKRVVGVLLGCWRSKGVLDVSNSFAVPFDEDDKDKSVWFLDH 75
            |.:||::|.|:||.:.|..:  ...||:|.|||. ..|..::|:|.|:||.:|.:.:.:|   |.
  Rat    96 VRLHPVILASIVDSYERRNE--GAARVIGTLLGT-VDKHSVEVTNCFSVPHNESEDEVAV---DM 154

  Fly    76 DYLENMYGMFKKVNARERVVGWYHTGPKLHQNDIAINELVRRYCPNSVLVIIDAKPKDLGLPTEA 140
            ::.:|||.:.|||:..|.::|||.||..:.::.:.|:|...|..||.:.:.:|...::..:..:|
  Rat   155 EFAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTGLQNGRMSIKA 219

  Fly   141 YISVEEVHDDGSPTSKTFEHVPSEIGAEEAEEVGVEHLLRDI--KDTTVGSLSQKITNQLMGLKG 203
            |:|. .:...|......|..:..:....:.|.:||:.:::..  .:..:|     :::.|..:.|
  Rat   220 YVST-LMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMKTCFSPNRVIG-----LSSDLQQVGG 278

  Fly   204 LNAQLRD----IKQYLQRVGDSKMPINHQIVYQLQDIFNLLPDITNDQFTGTMYVKTNDQMLVVY 264
            .:|:::|    :.||.:.|...|:..::.:...|..:.|.:|.|..|.|...:....||.::|.|
  Rat   279 ASARIQDALSTVLQYAEDVLSGKVSADNTVGRFLMSLVNQVPKIVPDDFETMLNSNINDLLMVTY 343

  Fly   265 LASMVRSIIALHNLINNKLAN 285
            ||::.:|.|||    |.||.|
  Rat   344 LANLTQSQIAL----NEKLVN 360

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpn8NP_001261167.1 PLN03246 7..308 CDD:215645 78/281 (28%)
MPN_RPN7_8 9..290 CDD:163693 78/281 (28%)
Eif3fNP_001264231.1 MPN_eIF3f 96..358 CDD:163695 75/277 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1310
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D455272at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

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