Protein Alignment Rpn8 and eif-3.F

DIOPT Version :9

• Sequence 1: NP_001261167.1
• Gene: Rpn8 / 37894
• FlyBaseID: FBgn0002787
• Length: 358
• Species: Drosophila melanogaster
• Sequence 2: NP_495988.1
• Gene: eif-3.F / 174478
• WormBaseID: WBGene00001229
• Length: 294
• Species: Caenorhabditis elegans
• Alignment Length: 309
• Identity: 80/309 - (25%)
• Similarity: 139/309 - (44%)
• Gaps: 57/309 - (18%)

  Fly     3 SQEVSVNKVIVHPLVLLSVVD-HFNR---MGKIGNQKRVVGVLLGCWRSKGVLDVSNSFAVPFDE 63
            :..::||   |||.|.::||| |..|   ..|...|::.:|.|:| :..||.:.|:|.||:||:|
 Worm     2 ASNLTVN---VHPGVYMNVVDTHMRRTKSSAKNTGQEKCMGTLMG-YYEKGSIQVTNCFAIPFNE 62

  Fly    64 DDKDKSVWFLDHDYLENMYGMFKKVNARERVVGWYHTGPKLHQNDIAINELV------------- 115
            .:.|..:   |..:.:.|....||.:..|:.|||:     |..:||..:.|:
 Worm    63 SNDDLEI---DDQFNQQMISALKKTSPNEQPVGWF-----LTTSDITSSCLIYHDYYVRVITEAS 119

  Fly   116 -RRYCPNSVLVIIDAK-PKDLG--LPTEAYI-SVEEVHDDGSPTSKTFEHVPSEIGAEEAEEVGV 175
             ||..|..|::.||.. ..|:.  :|..||: |...:.....|....|..:..|:.|...|.|.:
 Worm   120 ARRESPPIVVLTIDTTFSGDMSKRMPVRAYLRSKAGIPGAAGPHCAIFNPLRVELAAFPGELVAM 184

  Fly   176 EHLLRDI----KDTTVGS-LSQKITNQLMGLKGLNAQL---RDIKQYLQRVGDSKMPINHQIVYQ 232
            :.:.:.:    ::.|:.| |.|..|:....::.|...|   .|:.:..::.||:      ||..|
 Worm   185 QLIEKALDSRRREATLESGLEQLETSTAQMIEWLERMLHYVEDVNKNGEKPGDA------QIGRQ 243

  Fly   233 LQDIF-----NLLPDITNDQFTGTMYVKTNDQMLVVYLASMVRSIIALH 276
            |.||.     |:.|:..:.....|:    .|.::|.|||.:.::.:.:|
 Worm   244 LMDIVTASSNNMQPEKLDTLVKNTL----RDYVMVSYLAKLTQTQLQVH 288

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rpn8	NP_001261167.1	PLN03246	7..308	CDD:215645	80/305 (26%)
		MPN_RPN7_8	9..290	CDD:163693	79/303 (26%)
eif-3.F	NP_495988.1	MPN_eIF3f	7..291	CDD:163695	80/304 (26%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG1310
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D455272at33208
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	3	2.820