DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpn8 and rpn-8

DIOPT Version :9

Sequence 1:NP_001261167.1 Gene:Rpn8 / 37894 FlyBaseID:FBgn0002787 Length:358 Species:Drosophila melanogaster
Sequence 2:NP_491319.1 Gene:rpn-8 / 172009 WormBaseID:WBGene00004464 Length:362 Species:Caenorhabditis elegans


Alignment Length:324 Identity:201/324 - (62%)
Similarity:258/324 - (79%) Gaps:4/324 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 VNKVIVHPLVLLSVVDHFNRMGKIGNQKRVVGVLLGCWRSKGVLDVSNSFAVPFDEDDKDKSVWF 72
            ||||.|||||||||||||||:.|..:.|||||||||..:....||:.|||||||||||||||.||
 Worm    38 VNKVTVHPLVLLSVVDHFNRVSKTQSVKRVVGVLLGSMKKDKTLDIGNSFAVPFDEDDKDKSTWF 102

  Fly    73 LDHDYLENMYGMFKKVNARERVVGWYHTGPKLHQNDIAINELVRRYCPNSVLVIIDAKPKDLGLP 137
            ||.||||:|||||.||.|:|::|||||||||||:|||||||.::|:|||.|||||||:||::|||
 Worm   103 LDMDYLESMYGMFYKVAAKEKIVGWYHTGPKLHKNDIAINEQLKRFCPNPVLVIIDAEPKNIGLP 167

  Fly   138 TEAYISVEEVHDDGSPTSKTFEHVPSEIGAEEAEEVGVEHLLRDIKDTTVGSLSQKITNQLMGLK 202
            |||||.|:||||||:|..||||||||:||||||||||||||||||||.|.|:|||:||:|||||:
 Worm   168 TEAYIEVQEVHDDGTPPIKTFEHVPSDIGAEEAEEVGVEHLLRDIKDQTAGTLSQRITDQLMGLR 232

  Fly   203 GLNAQLRDIKQYLQRVGDSKMPINHQIVYQLQDIFNLLPDITNDQFTGTMYVKTNDQMLVVYLAS 267
            ||.:||..|::||..:....:|:||.::|.:|::.|||||:|:..:..:..|:||||::.||:.|
 Worm   233 GLQSQLESIEKYLHDIVRGTLPVNHHVIYYVQEVLNLLPDVTHPDYIVSQNVQTNDQLMCVYMGS 297

  Fly   268 MVRSIIALHNLINNKL----ANRDAEEGKSDSKEAKEKNKDSKDKDNKETKDKDGKKAEEKADK 327
            :|||::||||||:||:    |.::.|.|:::.|:.::..||.||:...|.|:||.|.:.....|
 Worm   298 LVRSVVALHNLIDNKISLQKAEKEQETGEAEKKKDEKDKKDKKDEKKDEKKEKDSKSSTPNTPK 361

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpn8NP_001261167.1 PLN03246 7..308 CDD:215645 194/303 (64%)
MPN_RPN7_8 9..290 CDD:163693 187/284 (66%)
rpn-8NP_491319.1 MPN_RPN7_8 39..320 CDD:163693 187/280 (67%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160159463
Domainoid 1 1.000 184 1.000 Domainoid score I2035
eggNOG 1 0.900 - - E1_COG1310
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H2104
Inparanoid 1 1.050 426 1.000 Inparanoid score I974
Isobase 1 0.950 - 0 Normalized mean entropy S277
OMA 1 1.010 - - QHG53821
OrthoDB 1 1.010 - - D1275837at2759
OrthoFinder 1 1.000 - - FOG0003980
OrthoInspector 1 1.000 - - oto17228
orthoMCL 1 0.900 - - OOG6_102054
Panther 1 1.100 - - LDO PTHR10540
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1207
SonicParanoid 1 1.000 - - X2737
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1716.790

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