DRSC/TRiP Functional Genomics Resources

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Protein Alignment RNF148 and SPBP4H10.07

DIOPT Version :9

Sequence 1:NP_932351.1 Gene:RNF148 / 378925 HGNCID:22411 Length:305 Species:Homo sapiens
Sequence 2:NP_596181.1 Gene:SPBP4H10.07 / 2541304 PomBaseID:SPBP4H10.07 Length:583 Species:Schizosaccharomyces pombe


Alignment Length:410 Identity:78/410 - (19%)
Similarity:130/410 - (31%) Gaps:145/410 - (35%)


- Green bases have known domain annotations that are detailed below.


Human    11 HSSVS------SGLLRLSIFLLLSFPDSNGKAIWTAHLNITFQVGNEITSELGESGVFGNHSPLE 69
            |.||:      :.:.||.:..:.|..|||.:....|.:|   .:.|...::  ::.|....|.|.
pombe   183 HGSVNNLESPGTAIGRLPVRSVTSLADSNMEDYTRAVMN---YINNSENTQ--QASVSPEESQLV 242

Human    70 RVSG-VVALPEGW-----NQNACHPLTNFSRPKQA-----------DSWLALIERGGCTFTHKIN 117
            .:|. |.::..||     |.::.|...|...|...           |.:|:|:..|  .....:|
pombe   243 MLSRFVFSVASGWVSVLMNSSSAHQSNNLEFPSSISGNVESGNVAFDEFLSLLHAG--NLVQAMN 305

Human   118 V-----AAEKGANGVIIYNYQGTGS--KVFPM-----SHQGTENIVAVMISNLKGME-------- 162
            .     .||..||.|.:....|..:  :.|..     :|:|.| ::.::|..::.:.        
pombe   306 AETNPRTAELIANAVDLEEESGPINLFRTFRFDNLHRNHEGQE-VIPIIIVGIRSLRNSGSDEDD 369

Human   163 --------ILH--------------------------------SIQKGVYVTVIIEVG------- 180
                    ::|                                .|.:....:...:|.       
pombe   370 QPSADSPTLMHPSDLISSLVNSQNQTTSVSDNTGPNENVNEAEHISEDEQASTATDVNGISDNNG 434

Human   181 ---------RMHMQWVSHYIMYLFTFLAATIAYFYLDCVWRLTPR---VP-NSFTRRRSQIKTDV 232
                     |.:.....|                .|...|.:..|   || |....|...:.||.
pombe   435 SSTQQAPETRNNNSQTDH----------------QLPRSWAIYVREAFVPQNHPVLRAPSLFTDS 483

Human   233 KKAIDQLQLR---------VLKEGDEE-------LDLNEDNCVVCFDTYKPQDVVRIL-TCKHFF 280
            ....|.|.|.         |..:.|.|       ....::.|:||...::..|..|.| .|.|||
pombe   484 PTYEDMLLLNSIIGIEKPPVASQKDLEKAGGVFPFSGTDERCLVCLSNFELNDECRRLKQCNHFF 548

Human   281 HKACIDPWLL-AHRTCPMCK 299
            |:.|||.||. :..:||:|:
pombe   549 HRECIDQWLTSSQNSCPLCR 568

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RNF148NP_932351.1 PA_GRAIL_like 43..177 CDD:239037 31/210 (15%)
zf-RING_2 256..299 CDD:290367 18/44 (41%)
SPBP4H10.07NP_596181.1 PHA03328 77..>156 CDD:223046
zf-rbx1 <522..568 CDD:289448 18/45 (40%)
RING 525..570 CDD:238093 19/44 (43%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 58 1.000 Domainoid score I3480
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm53615
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1977
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.940

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