DRSC/TRiP Functional Genomics Resources

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Protein Alignment mAChR-A and chrm1

DIOPT Version :9

Sequence 1:NP_523844.2 Gene:mAChR-A / 37892 FlyBaseID:FBgn0000037 Length:805 Species:Drosophila melanogaster
Sequence 2:XP_004913717.1 Gene:chrm1 / 100490434 XenbaseID:XB-GENE-22061118 Length:521 Species:Xenopus tropicalis


Alignment Length:752 Identity:245/752 - (32%)
Similarity:317/752 - (42%) Gaps:280/752 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    57 TLLTALFENLTSTAASGLYDPYSGMYGNQTNGTIGFETKGPRYSLASMVVMGFVAAILSTVTVAG 121
            |:.::....|||.|... |||..|                  :::..:|::.....|||.|||.|
 Frog    19 TMASSTVTPLTSNATEE-YDPLGG------------------HAVWEVVLIVITTGILSLVTVIG 64

  Fly   122 NVMVMISFKIDKQLQTISNYFLFSLAIADFAIGAISMPLFAVTTILGYWPLGPIVCDTWLALDYL 186
            ||:|:::||::..|:|::||||.|||.||..|||:||.|:....::|.|.|||:.||.||||||:
 Frog    65 NVLVLLAFKVNSDLKTVNNYFLLSLACADIIIGALSMNLYTTYIVMGRWALGPVSCDLWLALDYV 129

  Fly   187 ASNASVLNLLIISFDRYFSVTRPLTYRAKRTTNRAAVMIGAAWGISLLLWPPWIYSWPYIEGKRT 251
            ||||||:||||||||||||:|||||||||||..|||:|||.||.||.:||.|.|..|.||.|:||
 Frog   130 ASNASVMNLLIISFDRYFSITRPLTYRAKRTPRRAAIMIGMAWFISFVLWAPAIIFWQYIVGERT 194

  Fly   252 VPKDECYIQFIETNQYITFGTALAAFYFPVTIMCFLYWRIWRETKKRQKDLPNLQAGKKDSSKRS 316
            |...:|||||. :...||||||:||||.|||||..||||::|||:.|.|:|..||....|.:...
 Frog   195 VEATDCYIQFF-SQPIITFGTAIAAFYLPVTIMIILYWRVYRETENRSKELAGLQGSGTDHTSHP 258

  Fly   317 NSSDENTVVNHASGGLLAFAQVGGNDHDTWRRPRSESSPDAESVYMTNMVIDSGYHGMHSRKSSI 381
                            ||...|           ||.||..|               |...|.|..
 Frog   259 ----------------LALGSV-----------RSGSSSGA---------------GESERLSRG 281

  Fly   382 KSTNTIKKSYTCFGSIKEWCIAWWHSGREDSDDFAYEQEEPSDLGYATPVTIETPLQSSVSRCTS 446
            :.|....|...||                                                    
 Frog   282 QRTVPRAKQGCCF---------------------------------------------------- 294

  Fly   447 MNVMRDNYSMGGSVSGVRPPSILLSDVSPTPLPRPPLASISQLQEMSAVTASTTANVNTSGNGNG 511
                               |..|.|:        |.|.|..:                       
 Frog   295 -------------------PRQLTSN--------PSLRSYPE----------------------- 309

  Fly   512 AINNNNNASHNGNGAVNGNGAGNGSGIGLGTTGNATHRDSRTLPVINRINSRSVSQDSVYTILIR 576
                     |..||:.|             |..:|...||        ::|.|.::|..|     
 Frog   310 ---------HRSNGSCN-------------TMEDAASADS--------LSSSSEAEDRPY----- 339

  Fly   577 LPSDGASSNAANGGGGGPGAGAAASASLSMQGDCAPSIKMIHEDGPTTTAAAAPLASAAATRRPL 641
                                        .|:..|:..|::             |:.| :....|.
 Frog   340 ----------------------------EMKNICSAVIRL-------------PMVS-SVVGTPK 362

  Fly   642 PSRDSEFSLPLG--------------RRMSHAQHDARLLNAKVIPKQLGKAGGGAAGGGVGGAHA 692
            .||.|..:|..|              |:.|.||..|  |.:.:|..:..|...|           
 Frog   363 GSRGSSDTLGRGDIEAETNGGKSEVTRKTSRAQVTA--LPSTIIRAKSEKNHHG----------- 414

  Fly   693 LMNARNAAKKKKKSQEKRQESKAAKTLSAILLSFIITWTPYNILVLIKPLTTCSDCIPTELWDFF 757
                      |:||....:|.|||||||||||:||:|||||||:||:.  |.|.||:|.:||:..
 Frog   415 ----------KRKSNSLIKEKKAAKTLSAILLAFILTWTPYNIMVLVS--TFCPDCVPKKLWELG 467

  Fly   758 YALCYINSTINPMCYALCNATFRRTYVRILTCKWHTR 794
            |.|||:|||:|||||||||.:||||:..:|.|:|..|
 Frog   468 YWLCYVNSTVNPMCYALCNRSFRRTFKMLLLCRWDKR 504

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mAChR-ANP_523844.2 7tm_4 117..>241 CDD:304433 81/123 (66%)
7tm_1 121..>314 CDD:278431 119/192 (62%)
chrm1XP_004913717.1 7tmA_mAChR_M1 48..493 CDD:341356 231/691 (33%)
TM helix 1 49..75 CDD:341356 12/25 (48%)
TM helix 2 82..108 CDD:341356 15/25 (60%)
TM helix 3 120..150 CDD:341356 26/29 (90%)
TM helix 4 162..185 CDD:341356 14/22 (64%)
TM helix 5 207..236 CDD:341356 19/28 (68%)
TM helix 6 422..452 CDD:341356 23/29 (79%)
TM helix 7 461..486 CDD:341356 16/24 (67%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 352 1.000 Domainoid score I1000
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H20189
Inparanoid 1 1.050 393 1.000 Inparanoid score I1932
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1245472at2759
OrthoFinder 1 1.000 - - FOG0001308
OrthoInspector 1 1.000 - - otm48994
Panther 1 1.100 - - O PTHR24247
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X324
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1111.070

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