DRSC/TRiP Functional Genomics Resources

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Protein Alignment mAChR-A and LOC100490372

DIOPT Version :10

Sequence 1:NP_523844.2 Gene:mAChR-A / 37892 FlyBaseID:FBgn0000037 Length:805 Species:Drosophila melanogaster
Sequence 2:XP_002937327.2 Gene:LOC100490372 / 100490372 XenbaseID:XB-GENE-29080159 Length:405 Species:Xenopus tropicalis


Alignment Length:230 Identity:68/230 - (29%)
Similarity:111/230 - (48%) Gaps:9/230 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    95 KGPRYSL---ASMVVMGFVAAILSTVTVAGNVMVMISFKIDKQLQTISNYFLFSLAIADFAIGAI 156
            :|.|.:|   ...|.:|.:..::..:|..||.:|.|...::|:|:|::..|:.|||:||..:..:
 Frog    43 EGNRTALEIAPQQVAVGSLLTVIDLITFLGNAVVFICPVVEKRLRTVTYMFIMSLAMADLLVACL 107

  Fly   157 SMPLFAVTTILGYWPLGPIVCDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTNRA 221
            .||...:..:.|.|..|...|..|::.|.:...||::.|..||.|||.||..|..|..:.:..|.
 Frog   108 VMPFSIIYEVTGMWLFGKQFCKVWISFDVMFCTASIVTLCFISLDRYCSVVTPYHYSKRMSRRRC 172

  Fly   222 AVMIGAAWGI-SLLLWPPWIYSWPYIEGKRTVPKDECYIQFIETNQYITFGTALAAFYFPVTIMC 285
            .:|....|.. ||:.:.|.:..|..|.|..|....:|.  |: ||.......:..|||.|..|||
 Frog   173 IIMTVTIWVYSSLISFLPVMQGWNEIPGVDTDNGKQCI--FV-TNWTFAIVASSLAFYIPFIIMC 234

  Fly   286 FLYWRIWRETKKRQKDL--PNLQAGKKDSSKRSNS 318
            .:|:.|:|.::.:...:  ..|......:|||.|:
 Frog   235 SMYFFIYRASRLKATRIVSQTLDLHYHPNSKRQNN 269

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mAChR-ANP_523844.2 7tmA_mAChR_DM1-like 105..>300 CDD:320428 60/195 (31%)
TM helix 1 106..132 CDD:320428 6/25 (24%)
TM helix 2 139..165 CDD:320428 8/25 (32%)
TM helix 3 177..207 CDD:320428 12/29 (41%)
TM helix 4 219..242 CDD:320428 6/23 (26%)
TM helix 5 265..294 CDD:320428 10/28 (36%)
7tm_GPCRs <707..783 CDD:475119
TM helix 6 716..738 CDD:410628
TM helix 7 751..776 CDD:410628
LOC100490372XP_002937327.2 7tmA_amine_R-like 58..346 CDD:320098 64/215 (30%)
TM helix 1 58..83 CDD:320098 6/24 (25%)
TM helix 2 90..117 CDD:320098 8/26 (31%)
TM helix 3 128..158 CDD:320098 12/29 (41%)
TM helix 4 170..190 CDD:320098 5/19 (26%)
TM helix 5 214..270 CDD:320098 16/56 (29%)
TM helix 6 271..301 CDD:320098
TM helix 7 311..339 CDD:320098
Blue background indicates that the domain is not in the aligned region.

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