DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment bs and AP1

DIOPT Version :10

Sequence 1:NP_726438.1 Gene:bs / 37890 FlyBaseID:FBgn0004101 Length:449 Species:Drosophila melanogaster
Sequence 2:NP_177074.1 Gene:AP1 / 843244 AraportID:AT1G69120 Length:256 Species:Arabidopsis thaliana


Alignment Length:80 Identity:30/80 - (37%)
Similarity:49/80 - (61%) Gaps:6/80 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly   166 GRVKIKMEYIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVMLLVASETGHVYTFATRKLQPMI 230
            ||.:::::.|:||:.|..|||||:.|::|||:|:|.|...:|.|:|.|..|.::.::|......|
plant     2 GRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALVVFSHKGKLFEYSTDSCMEKI 66

  Fly   231 T------SEAGKQLI 239
            .      |.|.:|||
plant    67 LERYERYSYAERQLI 81

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bsNP_726438.1 MADS_SRF_like 166..247 CDD:238166 30/80 (38%)
AP1NP_177074.1 MADS_MEF2_like 2..79 CDD:238165 27/76 (36%)
K-box 84..173 CDD:460228
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.