DRSC/TRiP Functional Genomics Resources

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Protein Alignment bs and AGL23

DIOPT Version :9

Sequence 1:NP_001286837.1 Gene:bs / 37890 FlyBaseID:FBgn0004101 Length:449 Species:Drosophila melanogaster
Sequence 2:NP_176715.1 Gene:AGL23 / 842846 AraportID:AT1G65360 Length:226 Species:Arabidopsis thaliana


Alignment Length:238 Identity:51/238 - (21%)
Similarity:92/238 - (38%) Gaps:45/238 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   162 KKTKGRVKIKMEYIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVMLLVASETGHVYTFATRKL 226
            |||.||.|:::..:..:.....||||||.|:.|||.|..||...::.::|.|..|.|::|....:
plant     3 KKTLGRRKVEIVKMTKESNLQVTFSKRKAGLFKKASEFCTLCDAKIAMIVFSPAGKVFSFGHPNV 67

  Fly   227 QPMITSEAGKQLIQTCLNSPDPPSVGGGDQRMSATGFEE--------------TELSYNIADED- 276
            ..::....|      |:       ||..:     |..:|              ||:...:..|. 
plant    68 DVLLDHFRG------CV-------VGHNN-----TNLDESYTKLHVQMLNKSYTEVKAEVEKEQK 114

  Fly   277 SKDDRSPTSSGNESDD----SSDVEMPAEAAEVATKLPASKTEVSAPPAASCSAATASSGHKTMP 337
            :|..|:.....||:.:    .|.:|:....:....::.....::....|....       |:|.|
plant   115 NKQSRAQNERENENAEEWWSKSPLELNLSQSTCMIRVLKDLKKIVDEKAIQLI-------HQTNP 172

  Fly   338 ALNYQTDTNSGPSTSTAAGGGGSADSKYVYSAASIANIPQKML 380
            .. |...:::..:.:|.:||..|.:..:........|..|.:|
plant   173 NF-YVGSSSNAAAPATVSGGNISTNQGFFDQNGMTTNPTQTLL 214

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bsNP_001286837.1 MADS_SRF_like 166..247 CDD:238166 23/80 (29%)
AGL23NP_176715.1 MADS 7..77 CDD:381807 22/75 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5068
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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