DRSC/TRiP Functional Genomics Resources

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Protein Alignment bs and AGL38

DIOPT Version :9

Sequence 1:NP_001286837.1 Gene:bs / 37890 FlyBaseID:FBgn0004101 Length:449 Species:Drosophila melanogaster
Sequence 2:NP_176709.2 Gene:AGL38 / 842838 AraportID:AT1G65300 Length:278 Species:Arabidopsis thaliana


Alignment Length:276 Identity:57/276 - (20%)
Similarity:95/276 - (34%) Gaps:84/276 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   169 KIKMEYIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVMLLVASETGH----------VYTFAT 223
            |:|:..|:|.:.|.|||:|||.|:.||..||.||.|.:...:|.|....          |....:
plant     4 KMKLSLIENSVSRKTTFTKRKKGMTKKLTELVTLCGVEACAVVYSPFNSIPEAWPSREGVEDVVS 68

  Fly   224 RKLQPMITSEAGKQLIQTCLNSPDPPSVGGGDQRMSATGFEETELSYNIADEDSKDD-------- 280
            :.::..:.....|.:.|....|          ||::    :|.|....:.||:....        
plant    69 KFMELSVLDRTKKMVDQETFIS----------QRIA----KEKEQLQKLRDENHNSQIRELMFGC 119

  Fly   281 -RSPTS----SGNESDDSS------------DVEMPAEAAEVATKLPASKTEVSAPPAASCSAAT 328
             :..|:    .|.:..|.|            .:|:..|..|.::.||       .|..|:.:|..
plant   120 LKGETNVYNLDGRDLQDLSLYIDKYLNGLTRRIEILIENGESSSSLP-------LPIVANAAAPV 177

  Fly   329 ASSGHKTMPALNYQTDTNSGPSTSTAAGGGGSADSKYVYSAA--SIANIPQKMLRQLIQSGH-LQ 390
            ...|    |...|.......|             .::.|.|.  ....||:|:        | ..
plant   178 GFDG----PMFQYHNQNQQKP-------------VQFQYQALYDFYDQIPKKI--------HGFN 217

  Fly   391 VHAEEDGNQYVTIPLS 406
            ::..:|.||.:.:.|:
plant   218 MNMNKDSNQSMVLDLN 233

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bsNP_001286837.1 MADS_SRF_like 166..247 CDD:238166 25/87 (29%)
AGL38NP_176709.2 MADS_SRF_like 1..84 CDD:238166 23/79 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5068
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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