DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment bs and AGL43

DIOPT Version :9

Sequence 1:NP_001286837.1 Gene:bs / 37890 FlyBaseID:FBgn0004101 Length:449 Species:Drosophila melanogaster
Sequence 2:NP_198838.2 Gene:AGL43 / 834020 AraportID:AT5G40220 Length:324 Species:Arabidopsis thaliana


Alignment Length:235 Identity:50/235 - (21%)
Similarity:78/235 - (33%) Gaps:37/235 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   183 TTFSKRKTGIMKKAYELSTLTGTQVMLLVASETGHVYTFATRKLQPMITSEAGKQLIQTCLNSPD 247
            |:.|.|...|.|||.||.||...:..::.....|.:.|:...:.:....:....||.:.......
plant    19 TSLSNRLETIFKKASELCTLCDIEACVIYYGPDGELKTWPPEREKVRDIALRYSQLNEALRRKKS 83

  Fly   248 PPSVGGGDQRMSATGFEETE------------LSYNIADEDSKDDRSPTSSGNESDDSSDVEMPA 300
            ....|..:::....|.:.|:            |.|.:||....|..||.....|    ..|....
plant    84 VNLHGFLNKKKKNKGLKNTDKKRKTSLKKVNVLKYPLADHYPPDQVSPLIQSLE----LHVSKFH 144

  Fly   301 EAAEVATKLPASKTEVSAPPAASCSAATASSGHKTMPALNYQTDTNSGPSTSTAAGGGGSADSKY 365
            |..|.......::|:......||.|             ||:||.:.:....|......|  |:..
plant   145 ERLEFLESRKQNETQPDHHSLASSS-------------LNHQTQSLNPSQFSLFMYNHG--DNTL 194

  Fly   366 VYSAASIANIPQKMLRQLIQSGHL--QVHAEE----DGNQ 399
            .....|.:|..|.....|::...|  |:..:|    |.||
plant   195 SQIPVSASNFNQDYFSALLEQSELKNQLMKQEICGNDQNQ 234

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bsNP_001286837.1 MADS_SRF_like 166..247 CDD:238166 15/63 (24%)
AGL43NP_198838.2 MADS_SRF_like <21..85 CDD:238166 14/63 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5068
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.