DRSC/TRiP Functional Genomics Resources

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Protein Alignment bs and AGL17

DIOPT Version :9

Sequence 1:NP_001286837.1 Gene:bs / 37890 FlyBaseID:FBgn0004101 Length:449 Species:Drosophila melanogaster
Sequence 2:NP_001324454.1 Gene:AGL17 / 816794 AraportID:AT2G22630 Length:227 Species:Arabidopsis thaliana


Alignment Length:110 Identity:35/110 - (31%)
Similarity:51/110 - (46%) Gaps:26/110 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   166 GRVKIKMEYIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVMLLVASETGHVYTFATRKLQPMI 230
            ||.||.::.||:...|..|||||:.|::|||.||:.|...:|.|::.|.|..:|.||:..::..|
plant     2 GRGKIVIQKIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVCLIIFSNTDKLYDFASSSVKSTI 66

  Fly   231 TSEAGKQLIQTCLNSPDPPSVGGGDQRMSATGFEETELSYNIADE 275
                                     :|.:....||.|| .|.|.|
plant    67 -------------------------ERFNTAKMEEQEL-MNPASE 85

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bsNP_001286837.1 MADS_SRF_like 166..247 CDD:238166 27/80 (34%)
AGL17NP_001324454.1 MADS_MEF2_like 2..73 CDD:238165 28/95 (29%)
K-box 81..171 CDD:396188 3/5 (60%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5068
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR48019
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.910

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