DRSC/TRiP Functional Genomics Resources

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Protein Alignment bs and Mef2d

DIOPT Version :9

Sequence 1:NP_001286837.1 Gene:bs / 37890 FlyBaseID:FBgn0004101 Length:449 Species:Drosophila melanogaster
Sequence 2:XP_006232833.1 Gene:Mef2d / 81518 RGDID:621489 Length:514 Species:Rattus norvegicus


Alignment Length:337 Identity:78/337 - (23%)
Similarity:119/337 - (35%) Gaps:92/337 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   166 GRVKIKMEYIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVMLLVASETGHVYTFATRKLQPMI 230
            ||.||:::.|.::..|..||:|||.|:||||||||.|...::.|::.:.:..::.:|:..:..::
  Rat     2 GRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYASTDMDKVL 66

  Fly   231 ----------TSEAGKQLIQTC----LNSPDPPSVGGGDQRMSATGFEETELSYNIADEDSKDDR 281
                      .|.....:|:|.    .|..|.|...|.|      ..|::.|.     ||.....
  Rat    67 LKYTEYNEPHESRTNADIIETLRKKGFNGCDSPEPDGED------SLEQSPLL-----EDKYRRA 120

  Fly   282 SPTSSGNESDDSSDVEMPAEAAEVATKLP-ASKTEVSAPPAASCSAATASSG-------HKTMPA 338
            |....|......|.|..|..|..|...:. .|..:.|.|.::..:.:..:|.       ....||
  Rat   121 SEELDGLFRRYGSSVPAPNFAMPVTVPVSNQSSMQFSNPSSSLVTPSLVTSSLTDPRLLSPQQPA 185

  Fly   339 LNYQTDTNSGPSTSTAAGG--GGSADSK-----------YVYSAAS-----IAN-------IPQK 378
            |...:.:...|....:||.  ||..:|.           ||.:.||     :||       ||.|
  Rat   186 LQRNSVSPGLPQRPASAGAMLGGDLNSANGACPSPVGNGYVSARASPGLLPVANGNGLNKVIPAK 250

  Fly   379 M------------------LRQLIQSG--HLQVHAEED--------------GNQYVTIPLSSTA 409
            .                  ||.:...|  .|..|..||              ....:|.|:.|.|
  Rat   251 SPPPPTHNTQLGAPSRKPDLRVITSQGGKGLMHHLTEDHLDLNNAQRLGVSQSTHSLTTPVVSVA 315

  Fly   410 ANLIKSNKLTAS 421
            ...:.|..|..|
  Rat   316 TPSLLSQGLPFS 327

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bsNP_001286837.1 MADS_SRF_like 166..247 CDD:238166 27/94 (29%)
Mef2dXP_006232833.1 MADS_MEF2_like 2..78 CDD:238165 23/75 (31%)
HJURP_C 97..151 CDD:403531 15/64 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5068
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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