DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment bs and AT5G27944

DIOPT Version :9

Sequence 1:NP_001286837.1 Gene:bs / 37890 FlyBaseID:FBgn0004101 Length:449 Species:Drosophila melanogaster
Sequence 2:NP_001119289.1 Gene:AT5G27944 / 6240316 AraportID:AT5G27944 Length:224 Species:Arabidopsis thaliana


Alignment Length:222 Identity:51/222 - (22%)
Similarity:83/222 - (37%) Gaps:45/222 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   162 KKTKGRVKIKMEYIDNKL------RRYTTFSKRKTGIMKKAYELSTLTGTQVMLLVASETGHVYT 220
            ||||..|:.:..:..:.|      ::.|..|.|:..:.|||.|||||...:|.:::....|    
plant     9 KKTKLSVRNQTCFKKSSLSSSSTAKKTTNLSMREQTMFKKALELSTLCDIEVCVILYGRDG---- 69

  Fly   221 FATRKLQPMITSEAGKQLIQTCLNSPDPPSVGGGDQRMSATGFEE-----TELSYNIADEDSKDD 280
                            :||:|.  ..|...|....:|.|.....|     |.||..:. :...||
plant    70 ----------------ELIKTW--PEDQSKVRDMAERFSRLHERERCKKRTNLSLFLR-KKILDD 115

  Fly   281 RSPTSSGNESDDSSDVEMPAEAAEVATKLP-ASKTEVSAPPAASCSAATASSGHK------TMPA 338
            ...:....|.:||.:..:.....::....| .::|::....|.|.:....||...      |.|.
plant   116 NKLSEKVLEMEDSLESGLRVLQNKLLLLQPEKNQTKLGQSRAVSSTTNLLSSPENHHNQQWTEPL 180

  Fly   339 LNYQTDTNSGPSTSTAAGGGGSADSKY 365
            .|..::|....|||:.:    ...|||
plant   181 ENGVSNTEQELSTSSLS----QHQSKY 203

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bsNP_001286837.1 MADS_SRF_like 166..247 CDD:238166 18/86 (21%)
AT5G27944NP_001119289.1 MADS_SRF_like 35..103 CDD:238166 21/89 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5068
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.