DRSC/TRiP Functional Genomics Resources

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Protein Alignment bs and Srf

DIOPT Version :9

Sequence 1:NP_001286837.1 Gene:bs / 37890 FlyBaseID:FBgn0004101 Length:449 Species:Drosophila melanogaster
Sequence 2:NP_001102772.1 Gene:Srf / 501099 RGDID:1559787 Length:504 Species:Rattus norvegicus


Alignment Length:484 Identity:181/484 - (37%)
Similarity:228/484 - (47%) Gaps:121/484 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 SSIGLSL-----ADPADMYGNPALGAGRPPSGGLLQNMGGVPP--MQRPNPAAGAPPAPQCQTLH 74
            |::|.||     ..|....|......||.|..|     .|:.|  ::|...||.||.|   ..|:
  Rat    16 SALGGSLNRTPTGRPGGSGGTRGANGGRVPGNG-----AGLGPGRLEREAAAAAAPTA---GALY 72

  Fly    75 SPQHASQQQQQQQQQQQQHQQQQQQQQQHPQQQRGLKRSGSDCYEDHHRSSGGLTLQGLDNVASG 139
            |......:..::::.              ..::||||||.|:       ...|:.:.|.:..|:.
  Rat    73 SGSEGDSESGEEEEL--------------GAERRGLKRSLSE-------MELGVVVGGPEAAAAA 116

  Fly   140 AVDDSVDNYNPLPNKKSPPANGKKTKGRVKIKMEYIDNKLRRYTTFSKRKTGIMKKAYELSTLTG 204
            |     ..|.|:....|....||||:||||||||:||||||||||||||||||||||||||||||
  Rat   117 A-----GGYGPVSGAVSGAKPGKKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTG 176

  Fly   205 TQVMLLVASETGHVYTFATRKLQPMITSEAGKQLIQTCLNSPDPP--SVGGGDQRMSATGFEETE 267
            |||:|||||||||||||||||||||||||.||.||||||||||.|  |....|||||||||||.:
  Rat   177 TQVLLLVASETGHVYTFATRKLQPMITSETGKALIQTCLNSPDSPPRSDPSTDQRMSATGFEEPD 241

  Fly   268 LSYNIADEDS----KDDRSPT-SSGNESDDSSDVEMPAEAAEVATKLPASK------TEVSAPPA 321
            |:|.:::.||    ||...|. :..|....:|.::   .|...:|.:..|.      |...||.:
  Rat   242 LTYQVSESDSSGETKDTLKPAFTVTNLPGTTSTIQ---TAPSTSTTMQVSSGPSFPITNYLAPVS 303

  Fly   322 ASCSAATASSGHKTMPALNYQTDTNSGPSTSTAAGG------------GGSADSKYVYSAASIAN 374
            ||.|.:..||.:.|:     ...|.|||.:|   ||            ||:...:....|..:..
  Rat   304 ASVSPSAVSSANGTV-----LKSTGSGPVSS---GGLMQLPTSFTLMPGGAVAQQVPVQAIHVHQ 360

  Fly   375 IPQKM---------LRQLIQSGHLQVHAEEDGNQYVTIPLSSTAANLIKSNKLTASGSG------ 424
            .||:.         |.|...||            .||:|     |.::.|:..|..|..      
  Rat   361 APQQASPSRDSSTDLTQTSSSG------------TVTLP-----ATIMTSSVPTTVGGHMMYPSP 408

  Fly   425 -----ASGSGTPVKNDASADKPLTIKQEF 448
                 |..||.       ||..||:...|
  Rat   409 HAVMYAPTSGL-------ADGSLTVLNAF 430

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bsNP_001286837.1 MADS_SRF_like 166..247 CDD:238166 76/80 (95%)
SrfNP_001102772.1 MADS_SRF_like 138..219 CDD:238166 76/80 (95%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 94 1.000 Domainoid score I7340
eggNOG 1 0.900 - - E1_COG5068
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 219 1.000 Inparanoid score I3489
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0004046
OrthoInspector 1 1.000 - - oto98650
orthoMCL 1 0.900 - - OOG6_103066
Panther 1 1.100 - - LDO PTHR48019
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X3888
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1110.820

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