DRSC/TRiP Functional Genomics Resources

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Protein Alignment bs and srfa

DIOPT Version :9

Sequence 1:NP_001286837.1 Gene:bs / 37890 FlyBaseID:FBgn0004101 Length:449 Species:Drosophila melanogaster
Sequence 2:NP_001103996.1 Gene:srfa / 30431 ZFINID:ZDB-GENE-990714-29 Length:539 Species:Danio rerio


Alignment Length:481 Identity:170/481 - (35%)
Similarity:213/481 - (44%) Gaps:135/481 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 GN-PALGAGRPPSGGLLQNMGGVPPMQ--RPNPAAGA-------------PPAPQCQTLHSPQHA 79
            || .|.||||..:|      .|:.|:|  ..:.|.||             ...|..:.:.|....
Zfish     4 GNGTARGAGRSGNG------TGLTPLQVGSTSGALGAVNSVINLPDGGRYDDGPSVEAVLSGSDG 62

  Fly    80 SQQQQQQQQQQQQHQQQQQQQQQHPQQQRGLKRSGSDCYEDHHRSSGGLTLQGLDNVASGAVDDS 144
            .......::..             ...:||:||..|:........|......|...|:||     
Zfish    63 DSDSGDDEESP-------------VPDRRGVKRERSELEVGGSSGSNAALSAGYGGVSSG----- 109

  Fly   145 VDNYNPLPNKKSPPANGKKTKGRVKIKMEYIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVML 209
            |....|          ||||:||||||||:|||||||||||||||||||||||||||||||||:|
Zfish   110 VAGAKP----------GKKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLL 164

  Fly   210 LVASETGHVYTFATRKLQPMITSEAGKQLIQTCLNSPD-PPSVG-GGDQRMSATGFEETELSYNI 272
            ||||||||||||||||||||||||.||.|||||||||| ||... ..||||||||||||:|:|.:
Zfish   165 LVASETGHVYTFATRKLQPMITSETGKALIQTCLNSPDSPPRTDPSTDQRMSATGFEETDLTYQV 229

  Fly   273 ADED-------------------------SKDDRSPTSSGNESDDSSDVEMPAEAAEVATKLPAS 312
            ::.|                         |...:||.||   |..||.|.|..:::.     |:.
Zfish   230 SEADGLTEPKEMLKPTFTAATLPGGTNTISTTTQSPVSS---SPSSSSVAMHTQSSG-----PSL 286

  Fly   313 KTEVSAPPAASCSAATASS------------------------------GHKTMPALNYQTDTNS 347
            ......|.||..:|.:.||                              |..|:|....||.:.:
Zfish   287 SGTTCWPVAAGMNAQSISSANGTVLKSSSAGMMQLPSGFTLMPGASLPPGTHTVPLSQLQTHSLA 351

  Fly   348 GPSTSTAAGGGGSADSKYVYSAASIANIPQKM------LRQLIQSGHLQVHAEEDGNQYVTIPLS 406
            .....|.|...||.........|::..:|..:      :.|.:|:  :|||..         |.|
Zfish   352 IQCPQTQANSSGSTAVPAHTQPAALFRLPAAVSLTGGAMPQQLQA--IQVHPS---------PQS 405

  Fly   407 STAANLIKSNKLTASGSGASGSGTPV 432
            |.::..|..   |:|.:.||.:.|.|
Zfish   406 SDSSPEISQ---TSSSATASHTATIV 428

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bsNP_001286837.1 MADS_SRF_like 166..247 CDD:238166 76/80 (95%)
srfaNP_001103996.1 MADS_SRF_like 121..202 CDD:238166 76/80 (95%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 94 1.000 Domainoid score I7423
eggNOG 1 0.900 - - E1_COG5068
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0004046
OrthoInspector 1 1.000 - - otm26004
orthoMCL 1 0.900 - - OOG6_103066
Panther 1 1.100 - - LDO PTHR48019
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R683
SonicParanoid 1 1.000 - - X3888
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 1 1.500 - -
1111.390

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