DRSC/TRiP Functional Genomics Resources

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Protein Alignment bs and mef2c

DIOPT Version :9

Sequence 1:NP_001286837.1 Gene:bs / 37890 FlyBaseID:FBgn0004101 Length:449 Species:Drosophila melanogaster
Sequence 2:XP_012823888.1 Gene:mef2c / 100127198 XenbaseID:XB-GENE-486958 Length:472 Species:Xenopus tropicalis


Alignment Length:348 Identity:74/348 - (21%)
Similarity:121/348 - (34%) Gaps:117/348 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   166 GRVKIKMEYIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVMLLVASETGHVYTFATRKLQPMI 230
            ||.||::..|.::..|..||:|||.|:||||||||.|...::.|::.:.|..::.:|:..:..::
 Frog     2 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYASTDMDKVL 66

  Fly   231 ----------TSEAGKQLIQT--------CLNSPDPPSVGGGDQRMSATGFEETELSYNIADEDS 277
                      .|.....:::|        | :||||                         |.|.
 Frog    67 LKYTEYNEPHESRTNSDIVETLRKKGLNGC-DSPDP-------------------------DADD 105

  Fly   278 KDDRSPTSSGNESDDSSDVEM----------PAEAAEVATKLPASKTEVSAPPAASCSAATASSG 332
            ....||.|.......:.|:::          |....|:...:|     ||.|.:.:.|....|.|
 Frog   106 SVGHSPESEDKYRKINEDIDLMISRQRLCAVPPPNFEMPVSIP-----VSNPNSLAYSNPAVSLG 165

  Fly   333 HKTMPALNYQT--------------------------DTNSGPSTSTAAGGGGSADSKYVYSAAS 371
            :..:..|::.:                          |..:|..||...|.|...:|..:  ..|
 Frog   166 NHNLLPLSHPSLHRNSMSPGVTHRPPSAGNTGGLMGGDLTTGAGTSAGNGYGNHRNSPGL--LVS 228

  Fly   372 IANIPQKM------------------LRQLIQSGHLQVHAEEDGNQYVTIPLSSTAANLIKSNKL 418
            ..|:.:.|                  ||.||..|...           |:|..|...:|:.:.::
 Frog   229 PGNLNKNMQTKSPPPMNLGMNNRKPDLRVLIPPGSKN-----------TMPSVSEDVDLLLNQRI 282

  Fly   419 TASGSGASGSGTPVKNDASADKP 441
            ..|.| |....|||...|:...|
 Frog   283 NNSQS-AQSLATPVVPVATPTLP 304

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bsNP_001286837.1 MADS_SRF_like 166..247 CDD:238166 28/98 (29%)
mef2cXP_012823888.1 MADS_MEF2_like 2..78 CDD:238165 24/75 (32%)
HJURP_C <107..152 CDD:403531 9/49 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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