DRSC/TRiP Functional Genomics Resources

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Protein Alignment betaTub60D and Tuba8

DIOPT Version :9

Sequence 1:NP_523842.2 Gene:betaTub60D / 37888 FlyBaseID:FBgn0003888 Length:454 Species:Drosophila melanogaster
Sequence 2:NP_059075.1 Gene:Tuba8 / 53857 MGIID:1858225 Length:449 Species:Mus musculus


Alignment Length:462 Identity:178/462 - (38%)
Similarity:274/462 - (59%) Gaps:28/462 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MREIVNLQAGQCGNQIGAKFWEIISEEHGIDSNGIY------VGDSDLQLERVSVYYNEASAVTR 59
            |||.:::..||.|.|||...||:...||||.::|.:      :.|.|    ..:.:::|      
Mouse     1 MRECISVHVGQAGVQIGNACWELFCLEHGIQADGTFGTQASKINDDD----SFTTFFSE------ 55

  Fly    60 SSGGKYVPRAILLDLEPGTMESVRSGPYGQLFRPDNFVYGQSGAGNNWAKGHYTEGAELVDNVLD 124
            :..||:||||:::||||..::.||:|.|.|||.|:..:.|:..|.||:|:||||.|.|.:|.|||
Mouse    56 TGNGKHVPRAVMVDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLD 120

  Fly   125 VVRKECENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPY 189
            .:||..:.|..||||.:.||.|||||||..:||:.::..:|..:....:::.|:|:||..|||||
Mouse   121 RIRKLTDACSGLQGFLIFHSFGGGTGSGFTSLLMERLSLDYGKKSKLEFAIYPAPQVSTAVVEPY 185

  Fly   190 NATLSIHQLVENTDETYCIDNEALYDICFRTLKVSNPSYGDLNHLVSLTMSGVTTCLRFPGQLNA 254
            |:.|:.|..:|::|..:.:||||:||||.|.|.:..|:|.:||.|:|..:|.:|..|||.|.||.
Mouse   186 NSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNV 250

  Fly   255 DLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTV 319
            ||.:...|:||:||:||.:..:||:.|.....:..|:|.|:|...|:..:.|..||||||:|:..
Mouse   251 DLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNSQMVKCDPRHGKYMAC 315

  Fly   320 AAVFRGRMSMKEVDEQMLAVQNKNSSYFVEWIPNNVKTAVCDIPP--------KGLKMSSTFIGN 376
            ..::||.:..|:|:..:.|::.|.:..||:|.|...|..:...||        ..::.:...:.|
Mouse   316 CMLYRGDVVPKDVNVAIAAIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSN 380

  Fly   377 TTAIQELFKRISEQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEATADDEFD 441
            ||||.|.:.|:..:|..|:.::||:|||.||||:|.||:||..::..|..:|    |....|.|:
Mouse   381 TTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY----EEVGTDSFE 441

  Fly   442 PEVNQEE 448
            .|...||
Mouse   442 EENEGEE 448

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
betaTub60DNP_523842.2 PLN00220 1..450 CDD:215107 178/462 (39%)
beta_tubulin 2..432 CDD:276956 171/443 (39%)
Tuba8NP_059075.1 PTZ00335 1..439 CDD:185562 173/451 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5023
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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