DRSC/TRiP Functional Genomics Resources

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Protein Alignment betaTub60D and tube1

DIOPT Version :9

Sequence 1:NP_523842.2 Gene:betaTub60D / 37888 FlyBaseID:FBgn0003888 Length:454 Species:Drosophila melanogaster
Sequence 2:NP_001016136.1 Gene:tube1 / 100488997 XenbaseID:XB-GENE-492734 Length:472 Species:Xenopus tropicalis


Alignment Length:464 Identity:142/464 - (30%)
Similarity:239/464 - (51%) Gaps:44/464 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MREIVNLQAGQCGNQIGAKFWEIISEEH-GIDSNGIYVGDSDLQLERVSVYYNEASAVTRSSG-- 62
            |.:.:.:|.||||||||.:||::...|| .::..||:.       |.:..::........:.|  
 Frog     1 MTQSIVVQVGQCGNQIGCRFWDLALREHASVNKKGIFD-------EALCSFFRNVDTRAEAGGAD 58

  Fly    63 ---GKYV---PRAILLDLEPGTMESVRSGPYGQLFRPDNFVYGQSGAGNNWAKGHYTEGAELVDN 121
               ||..   .||:|:|:|.|.:..:..||...||.....:...||:|||||.||...|.:..::
 Frog    59 AQRGKICSLKARAVLIDMEEGVVNEILQGPLRDLFDSKQLITDVSGSGNNWAVGHKLYGGQYREH 123

  Fly   122 VLDVVRKECENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPKVSDTVV 186
            :::.:|:..|.|||||.|.:.||:|||||||:||.:::.:.||:|:......||.||.: .|.:.
 Frog   124 IVENLRRTAEQCDCLQCFFVIHSMGGGTGSGLGTFVLNVLEEEFPEVYRFVTSVYPSAE-DDVIT 187

  Fly   187 EPYNATLSIHQLVENTDETYCIDNEALYDICFRTLKVSNPS------------------------ 227
            .|||:.|::.:|.|:.|....|:|:||.||..:..:::|..                        
 Frog   188 SPYNSVLAMKELTEHADCVLPIENQALVDIVNKINQMANTGKLGNVKSNSLLTSNKGGIKENEKP 252

  Fly   228 YGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTV 292
            :..:|::|:..:..:|:..||.|.||.||.::::|:||||:||:......||.:..........:
 Frog   253 FDAMNNIVANLLLNLTSSARFEGSLNMDLNEISMNLVPFPQLHYLTSSLTPLYTLADVNVPTRRL 317

  Fly   293 PELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLAVQNKNSSYFVEWIPNNVKT 357
            .::....|...:.:...||:|..||..|.:.||.:.:.::...:..:  |....||.|.....||
 Frog   318 DQMFSDAFSKDHQLIRADPKHSLYLACALMVRGNVQISDLRRNIERL--KPFLQFVSWNQEGWKT 380

  Fly   358 AVCDIPPKGLKMSSTFIGNTTAIQELFKRISEQFSAMFRRKAFLHWYTG-EGMDEMEFTEAESNM 421
            .:|.:||.|...|...:.|.|.::..|..:.::||.::|:||.||.|.. :||::..||||.|::
 Frog   381 GLCSVPPVGHSHSLLALANNTCVKPTFIELRDRFSKLYRKKAHLHHYMQVDGMEQHCFTEAISSL 445

  Fly   422 NDLVSEYQQ 430
            :.|:.||.|
 Frog   446 SSLIEEYSQ 454

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
betaTub60DNP_523842.2 PLN00220 1..450 CDD:215107 142/464 (31%)
beta_tubulin 2..432 CDD:276956 141/463 (30%)
tube1NP_001016136.1 PTZ00387 1..456 CDD:240395 142/464 (31%)
epsilon_tubulin 2..455 CDD:276959 141/463 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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