DRSC/TRiP Functional Genomics Resources

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Protein Alignment nvy and Cbfa2t3

DIOPT Version :9

Sequence 1:NP_001261166.1 Gene:nvy / 37886 FlyBaseID:FBgn0005636 Length:757 Species:Drosophila melanogaster
Sequence 2:NP_001101923.1 Gene:Cbfa2t3 / 361431 RGDID:1310547 Length:619 Species:Rattus norvegicus


Alignment Length:654 Identity:197/654 - (30%)
Similarity:293/654 - (44%) Gaps:159/654 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   132 PDSPPD---SSRSLAPRSPHSPLQLHQHPQRNASVSPVVNGSSSGGGGVGSS------------- 180
            ||||.:   ..||..|..|..|....|...|..|.:|..:|..    |..:|             
  Rat    36 PDSPAEVKTQPRSTPPSMPPPPPTSSQGATRPPSFTPHTHGED----GPATSLPHGRFHGCLKWS 96

  Fly   181 -------GTSPTPT-----PGSQHAASLAAAAAAAAAAHVEQ------ARLVSKMRKFLGALVQF 227
                   |:|.:||     |.:.:..|...|.::.|:...:.      ||.:||:::||..|.||
  Rat    97 MVCLLMNGSSHSPTAIHGAPSTPNGFSNGPATSSTASLSTQHLPPACGARQLSKLKRFLTTLQQF 161

  Fly   228 SQELGQPEVCERVRALVLSLCSGSISVEEFRLALQEAINLPLRPYVVPLLKNSIALVQREILALA 292
            ..:: .||:.||||.|||.|.:.::::|||...||||.|.||||:|:|.||.::.|:|||:|..|
  Rat   162 GSDI-SPEIGERVRTLVLGLVNSTLTIEEFHSKLQEATNFPLRPFVIPFLKANLPLLQRELLHCA 225

  Fly   293 RATNQSALQYVTNNEQAVME-FAPHGVASAEFGDIFIQLEAPTSNGSSAVFKRRSSDSMMEHGGH 356
            |...|:..||:..:||.::: .|...|.|:|     :.||. ..||     ||::.|...|:|  
  Rat   226 RLAKQTPAQYLAQHEQLLLDASATSPVDSSE-----LLLEV-NENG-----KRKTPDRTKENG-- 277

  Fly   357 NGLQEWNEYMASGGAGYPPPPSKRLTLHPAH----SVVAYGEYGVSSAEGLPSAAAFMQRDERDL 417
                                 |.|..|||.|    |.........|.:.|||...   .......
  Rat   278 ---------------------SDRDPLHPDHLSKRSCTLSPAQRCSPSNGLPHPT---PPPPPHY 318

  Fly   418 RMSE-AQARHAAPPQRAGNPQPNPNAAAPGA-PGAGGE-------------EEWKNIHTMLNCIS 467
            |:.: |.|.|.....|..:|:.......|.| ||:..|             ||||:::::||||.
  Rat   319 RLEDMAMAHHFRDSYRHPDPRELRERHRPLAIPGSRQEEVIDHRLTEREWAEEWKHLNSLLNCIM 383

  Fly   468 AMVDKTKRAITILQ--------------------QRGIEPQHPNSGQEVTPAAMAE-----LRRQ 507
            .|.:||:|::|:|:                    :.|.:...|.|.:.:...:.:|     :.|.
  Rat   384 DMAEKTRRSLTVLRRCQEADREELNHWIRCYSDSEEGKKGPTPISARSLNSCSGSEGSQLDVHRD 448

  Fly   508 TEEKV------AEFKRNAEDAVTQVKRQAVIEIQRAVVAAETRAAEIMTQERLRMEKFFMEMSRH 566
            ...:.      .|..|.||:||.:|||||:.|:|:||..||.:|.|::|.||.:||:...|..|.
  Rat   449 FTPRTLSGYMPEEIWRKAEEAVNEVKRQAMSELQKAVSDAERKAHELITTERAKMERALAEAKRQ 513

  Fly   567 SSGERDLDNKSPSMASAQNGSNLQQQCWNCGRKATETCSGCNMARYCSASCQYRDWDSHHQVCGN 631
            :|.:      :.::.:.|..|:  :.||||||||:|||||||.||||.:.||::||:.||.|||.
  Rat   514 ASED------ALTVINQQEDSS--ESCWNCGRKASETCSGCNAARYCGSFCQHKDWEKHHHVCGQ 570

  Fly   632 TRASELSAKHLHSASNLSLRNAMATRSPPTPNSAAHLQAAAAAAAAAAGAREAVSAPVGGPGAGI 696
                             ||:...|..:.|.|.     |..|.|:.:.||: ...|.|. .||..:
  Rat   571 -----------------SLQGPAAAVADPLPG-----QPDATASPSEAGS-AGPSRPC-SPGPPV 611

  Fly   697 AVGT 700
            .:.|
  Rat   612 PLDT 615

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nvyNP_001261166.1 TAFH 213..304 CDD:197785 43/90 (48%)
NHR2 <454..>482 CDD:285941 14/47 (30%)
zf-MYND 593..629 CDD:280009 25/35 (71%)
Cbfa2t3NP_001101923.1 TAFH 147..233 CDD:284862 41/86 (48%)
NHR2 355..421 CDD:285941 15/65 (23%)
vATP-synt_E 460..>529 CDD:304907 28/74 (38%)
zf-MYND 532..568 CDD:280009 25/35 (71%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166350403
Domainoid 1 1.000 89 1.000 Domainoid score I7654
eggNOG 1 0.900 - - E1_28KWJ
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H74543
Inparanoid 1 1.050 225 1.000 Inparanoid score I3411
OMA 1 1.010 - - QHG50012
OrthoDB 1 1.010 - - D198762at33208
OrthoFinder 1 1.000 - - FOG0001881
OrthoInspector 1 1.000 - - otm46393
orthoMCL 1 0.900 - - OOG6_103448
Panther 1 1.100 - - LDO PTHR10379
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1413
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1514.770

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