DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment nvy and runx1t1

DIOPT Version :9

Sequence 1:NP_001261166.1 Gene:nvy / 37886 FlyBaseID:FBgn0005636 Length:757 Species:Drosophila melanogaster
Sequence 2:XP_004915205.1 Gene:runx1t1 / 100491944 XenbaseID:XB-GENE-481238 Length:585 Species:Xenopus tropicalis


Alignment Length:677 Identity:196/677 - (28%)
Similarity:296/677 - (43%) Gaps:172/677 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   104 HTSSSRSERDRERERERERERDRLCRTPPDSPPD---SSRSLAPRSPHSPLQLHQHPQRNASVSP 165
            |..|.....||..:|         | |.||||.|   .||...|..|..|..  |...|.:|.:|
 Frog     2 HFHSLPGPFDRTEKR---------C-TMPDSPVDVKTQSRLTPPTMPPPPTT--QGGPRTSSFTP 54

  Fly   166 --VVNGSSSGGGGVGSSGTSP---TPTPGSQHAASLAAAAAAAAAAHVEQARLVSKMRKFLGALV 225
              :.||:|.....:..:.:.|   :..|.|..::|||......|..    ||.:||:::||..|.
 Frog    55 TTLTNGTSHSPTALNGAPSPPNGFSNGPSSSSSSSLANQQLPPACG----ARQLSKLKRFLTTLQ 115

  Fly   226 QFSQELGQPEVCERVRALVLSLCSGSISVEEFRLALQEAINLPLRPYVVPLLKNSIALVQREILA 290
            ||..:: .||:.||||.|||.|.:.::::|||...||||.|.||||:|:|.||.::.|:|||:|.
 Frog   116 QFGNDI-SPEIGERVRTLVLGLVNSTLTIEEFHSKLQEATNFPLRPFVIPFLKANLPLLQRELLH 179

  Fly   291 LARATNQSALQYVTNNEQAVMEFAPHGVASAEFGDIFIQLEAPTSNGSSAVFKRRSSDSMMEHG- 354
            .||...|:..||:..:||.:::.:.  .:..:..::.:.:   ..||     |||:.|...|:| 
 Frog   180 CARLAKQNPAQYLAQHEQLLLDAST--TSPVDSSELLLDV---NENG-----KRRTPDRTKENGF 234

  Fly   355 ------------------------GHNGLQEWNEYMASGGAGYPPPPSKRLTLHPAHSVVAYGEY 395
                                    .:|||.     ....|..:|.||.      |.|       |
 Frog   235 DREPLHSEHPSKRPCTISPGQRYSPNNGLS-----FQPNGLPHPTPPP------PQH-------Y 281

  Fly   396 GVSSAEGLPSAAAFMQRD------ERDLR-MSEAQARHAAPPQRAGNPQPNPNAAAPGAPGAGGE 453
            .:..     .|.|...||      .|||| .:.....|....:...:.:......|         
 Frog   282 RLDD-----MAIAHHYRDSYRHPNHRDLRDRNRPMGLHGTRQEEMIDHRLTDREWA--------- 332

  Fly   454 EEWKNIHTMLNCISAMVDKTKRAITILQ-----------------------QRGIEPQHPNSGQE 495
            ||||::..:||||..||:||:|::|:|:                       ::|......:|.|:
 Frog   333 EEWKHLDHLLNCIMDMVEKTRRSLTVLRRCQEADREELNYWIRRYSDAEDLKKGSSSSSSHSRQQ 397

  Fly   496 --VTPAAM-AELRRQTEEKVA------EFKRNAEDAVTQVKRQAVIEIQRAVVAAETRAAEIMTQ 551
              |.|..: .|..|:...:.|      |..:.||:||.:|||||:.|:|:||..||.:|.|::|.
 Frog   398 SPVNPEPVPLESHREFLHRPASGYVPEEIWKKAEEAVNEVKRQAMTELQKAVSEAERKAHEMITT 462

  Fly   552 ERLRMEKFFMEMSRHSSGERDLDNKSPSMASAQNGSNLQQQCWNCGRKATETCSGCNMARYCSAS 616
            ||.:||:...|..|.::.:      :.|:.:.|..|:  :.||||||||:|||||||.||||.:.
 Frog   463 ERAKMERTVAEAKRQAAED------ALSVINQQEDSS--ESCWNCGRKASETCSGCNTARYCGSF 519

  Fly   617 CQYRDWDSHHQVCGNTRASELSAKHLHSASNLSLRNAMATRSPPTPNSAAHLQAAAAAAAAAAGA 681
            ||::||:.||.:||.|                    ..|.:...||       |.:::...::||
 Frog   520 CQHKDWEKHHHICGQT--------------------LQAQQQGETP-------AVSSSVTPSSGA 557

  Fly   682 REAVSAPVGG------PGAGIAVGTGA 702
            ...:..|...      ||....:.|.|
 Frog   558 GSPIDTPPAATPRSTTPGTPSTIETAA 584

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nvyNP_001261166.1 TAFH 213..304 CDD:197785 43/90 (48%)
NHR2 <454..>482 CDD:285941 15/50 (30%)
zf-MYND 593..629 CDD:280009 25/35 (71%)
runx1t1XP_004915205.1 TAFH 103..192 CDD:369407 42/89 (47%)
NHR2 318..384 CDD:370124 16/74 (22%)
NtpH 424..>490 CDD:225368 26/71 (37%)
zf-MYND 496..532 CDD:366792 25/35 (71%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D198762at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

Return to query results.
Submit another query.