DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment nord and Ndnf

DIOPT Version :9

Sequence 1:NP_611900.1 Gene:nord / 37882 FlyBaseID:FBgn0050418 Length:587 Species:Drosophila melanogaster
Sequence 2:XP_038964621.1 Gene:Ndnf / 312401 RGDID:1311080 Length:568 Species:Rattus norvegicus


Alignment Length:623 Identity:130/623 - (20%)
Similarity:227/623 - (36%) Gaps:183/623 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    65 QKCPSLQ--------RYRKMLKDFDDLED-------LYVDVPVHIALAERQRKRFVLNLNDSTPL 114
            ||.|:..        |.:.:..|...:.|       |:.|.|         |:.|.:...|:|||
  Rat    20 QKLPTRDEELFQMQIRDKALFHDSSVIPDGAEISSYLFRDTP---------RRYFFMVEEDNTPL 75

  Fly   115 TIRFS---APVGRKMYYNQ---------TGNP------------LRPAAVAPGPGVAVGSLVLPC 155
            ::..:   ||:..|:...:         :|:|            :....:....|..|...:...
  Rat    76 SVTVTPCDAPLEWKLSLQELPEESSADGSGDPEPLDQQKQQMTDVEGTELFSYKGNDVEYFLSSS 140

  Fly   156 ALRGQYDLFVLARHSGA-LKVDALAEHPQHD--WPLLNATHRIAIRTQNRVRKREMIVKWERSKF 217
            :..|.|.|.:|:..... .||.|... |:.|  :|.|....|:.:.:   :.:..:.:.|::|..
  Rat   141 SPSGLYQLELLSTEKDTHFKVYATTT-PESDQPYPDLPYDPRVDVTS---IGRTTVTLAWKQSPT 201

  Fly   218 DFHV---MHYCLVIQRLSMDTPRMIFTNFCQAVSAYT-DQQPMTPSCAAGGPLEGI--------- 269
            ...:   :.||:||.:      ...|.:.|.|.:..: |...|.      .|..|:         
  Rat   202 ASMLKQPIEYCVVINK------EHNFKSLCAAETKMSADDAFMV------APKPGLDFSPFDFAH 254

  Fly   270 WGAP---------------PQRERRL--NPRQNVHIVCTGKRRQQLLRRLLPRSSYHLDLFGIHQ 317
            :|.|               |:..|.:  .|:.::..:|.|.:....:..|.|.:.|:.|:|.:  
  Rat   255 FGFPTDNLGKDRSFLAKPSPKVGRHVYWRPKVDIKKICIGSKNIFTVSDLKPNTQYYFDVFMV-- 317

  Fly   318 GRQNLTLRLASSQVN-FNRTQPLALKQQALMQLKIG-------GQHGKQVYSFKVPQTTRQLGEP 374
               |....::::.|. |.||:..|  :|..::||.|       .:.||:...| .|.::.|....
  Rat   318 ---NTNTNMSTAFVGAFARTKEEA--KQKTVELKDGRVTDVVVKRKGKKFLRF-APVSSHQKVTL 376

  Fly   375 FMRHLLIPCSGSEIRVKLLRQRSEVGKTEAFYSPTYIRQ---KGVLPGERYLMRFEPSNDDEALR 436
            |:...:     ..::|::.|.    ||.....:...|||   :| .|..:||:|.: .|...|..
  Rat   377 FIHSCM-----DTVQVQVRRD----GKLLLSQNVEGIRQFQLRG-KPKGKYLIRLK-GNKKGASM 430

  Fly   437 AQKVMVALSSEALFRDLPELPQNTTV--FNVRTRCSRATIAWNGSPDERELSYCIIVFNLPQRNR 499
            .:.:.....|:..|   |.||.:|.:  |:....||..|:||.|:.:.|:  :||.         
  Rat   431 LKILATTRPSKHAF---PSLPDDTRIKAFDKLRTCSSVTVAWLGTQERRK--FCIY--------- 481

  Fly   500 SVVDFTNYCMDFVPKRVMQYRYFEWMTCRERQQ--SPDN--------------------IETETI 542
                          ::.:...|.|....|||.|  .||.                    :.||||
  Rat   482 --------------RKEVGGNYSEEQKRRERNQCLGPDTRKKSEKVLCKYFHSQNLQKAVTTETI 532

  Fly   543 LNLMPGSSYL--VYVTANLSMGKPLPYQALTLHMASQC 578
            .:|.||.|||  |||..:  .|..:.||:..:.....|
  Rat   533 RDLQPGKSYLLDVYVVGH--GGHSVKYQSKLVKTRKVC 568

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nordNP_611900.1 DUF2369 286..578 CDD:287188 77/328 (23%)
NdnfXP_038964621.1 DUF2369 291..381 CDD:401987 23/97 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 41 1.000 Domainoid score I12194
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 49 1.000 Inparanoid score I5385
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D152874at33208
OrthoFinder 1 1.000 - - FOG0004105
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_109866
Panther 1 1.100 - - O PTHR14619
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X5574
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
87.970

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