DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir60a and grik5

DIOPT Version :9

Sequence 1:NP_611901.1 Gene:Ir60a / 37881 FlyBaseID:FBgn0034994 Length:716 Species:Drosophila melanogaster
Sequence 2:NP_001315085.1 Gene:grik5 / 798791 ZFINID:ZDB-GENE-070821-6 Length:1067 Species:Danio rerio


Alignment Length:788 Identity:148/788 - (18%)
Similarity:268/788 - (34%) Gaps:221/788 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 LSNETANTVIFMLPE--------KDLGPDVWKAGVGCLDSFAQIFFFRNPKERFTRAYNLMLVHA 83
            :|.||.:  |.||.:        |::..|  |.....:|:.|.|.:.     ...:|..|.:..|
Zfish   196 ISRETLS--IRMLDDNLDPTPLLKEIRDD--KIATIIIDANASISYL-----ILKKASELGMTSA 251

  Fly    84 FH------LSSP---ADQIQEGFSKLINEAVTNPGPPDREELFQ-----MRVASDYNITNGTEDK 134
            |:      :..|   .|.|.:..|.::..::.|...|...|..:     .|...|.|...|.. .
Zfish   252 FYKYILTTMDFPLLWLDDIVDEQSNIVGFSMFNTTHPFYLEFIRSLNLSWREGCDINPYPGPA-L 315

  Fly   135 GELILADNYVIVVDSVDRLKELMKKKIVEMRSWNPGARFLVLFHNATCRNRPLGVAS-NIFKDLM 198
            ...:|.|...:||.:|..|.          ||...|.             :||...| .|::   
Zfish   316 SSALLFDAVHVVVSAVQELN----------RSQEIGV-------------KPLSCTSPQIWQ--- 354

  Fly   199 EMFYVHRVALLYANSTMNYNLLVNDY--------------YSNVNCRILNVQSVGQCHDGKLYPN 249
                       :..|.|||..:| :|              .:|....||.....|....|..|.|
Zfish   355 -----------HGTSLMNYLRMV-EYDGLTGRVEFNSKGQRTNYTLHILEKHRGGHKEIGIWYSN 407

  Fly   250 NAVVKASMQ-DYVSGFSPRNCTFFACSSISAPFV---------------EADCILGLEMRILGFM 298
            |.::..|.. |.....:..|.:....:.:..|:|               |..|:     .:|..:
Zfish   408 NTLLMNSTSLDINVSETLANKSLIITTILENPYVMRKINYQEFEGNEQYEGFCV-----DMLREL 467

  Fly   299 KNRLKFDVNQTCSLESRGEMDGP---ANWTGLLGKVQNNECDFVFGGYYPDNE---VADHFWGSD 357
            .:.|||  .....|...|....|   .:|||::|::.|.:.|.....:...:|   |.|.   |.
Zfish   468 SDILKF--TYRIKLVDDGLYGAPEPNGSWTGMVGELINRKADLAVAAFTITSEREKVIDF---SK 527

  Fly   358 TYLQ-DAHTWYIKMADRRPAWQALVGIFEAYTWIGFILI--LIISWLF----------WFTLVMI 409
            .::. .....|.....|:|.:.:.:..|....|: |:|:  |.:|.:.          |:.....
Zfish   528 PFMTLGISILYRVHIGRKPGYFSFLDPFSPAVWL-FMLLAYLAVSCVLFLSARLSPYEWYNPHPC 591

  Fly   410 LPEPKYYQQLSLTAINALAVTISIAVQE----RPICETTRLFFMALTLYGLNVVATYTSKMIA-- 468
            |.|.:...:...|..|:|...:...:|:    .|...:||........:.|.::::||:.:.|  
Zfish   592 LRERRDLLENQYTLGNSLWFPVGGFMQQGSEIMPRALSTRCVSGVWWAFTLIIISSYTANLAAFL 656

  Fly   469 ---TFQDPGYLHQLDELTEV--VAAGIPFGGHEESRDWFEND-----DDMWIFNGYNISPEFIPQ 523
               ..:.|  :...|:|.:.  :..|...||  .:..:|.|.     ..||.:. |:..|....:
Zfish   657 TVQRMEVP--IESPDDLADQTNIQYGTIHGG--STMTFFMNSRYQTYQRMWNYM-YSKQPSVFVK 716

  Fly   524 SKNLEAVKWGQRCILSNRMYTMQSPLADVIYAFPNNVF-------SSPVQMIMKAGFPFLFEMN- 580
            |.. |.:   .|.:.|...:.::|.:.:...:...|:.       :....:.|..|.||..|:: 
Zfish   717 STE-EGI---ARVVNSKYAFLLESTMNEYHRSLNCNLTQIGGLLDTKGYGIGMPLGSPFRDELSL 777

  Fly   581 SIIRLMRDVGIFQKIDADFRYNNTYLNRINKMRPQFPE----------TAIVLTTEHLKGPFFIL 635
            ::::|..:                  ||:..::.::.|          .|..|..|::.|.|.:|
Zfish   778 AVLQLQEN------------------NRLEILKRRWWEGGKCPKEEDHRAKGLGMENIGGIFVVL 824

  Fly   636 VVGSCWAALTFIGELIIHRWRTQLVSTSEQQ-----DRR---------------------SDKRR 674
            :.|...|....:.|.:   |.|:..:.:::.     ||:                     |.|:.
Zfish   825 ICGLIIAVFVAVMEFV---WSTRRSAETDEVRPLSCDRQYHSHTTVSVCQEMLTEFRNAVSCKKS 886

  Fly   675 RRRRRRKP 682
            .|.|||:|
Zfish   887 SRLRRRRP 894

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir60aNP_611901.1 None
grik5NP_001315085.1 PBP1_iGluR_Kainate_KA1_2 38..412 CDD:107389 54/263 (21%)
ANF_receptor 55..392 CDD:279440 48/243 (20%)
Periplasmic_Binding_Protein_Type_1 <313..383 CDD:299141 19/108 (18%)
Periplasmic_Binding_Protein_Type_2 427..797 CDD:304360 71/407 (17%)
Lig_chan 558..828 CDD:278489 52/297 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591644
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.840

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