DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir60a and gria1a

DIOPT Version :10

Sequence 1:NP_611901.1 Gene:Ir60a / 37881 FlyBaseID:FBgn0034994 Length:716 Species:Drosophila melanogaster
Sequence 2:NP_991161.1 Gene:gria1a / 798689 ZFINID:ZDB-GENE-020125-1 Length:914 Species:Danio rerio


Alignment Length:148 Identity:28/148 - (18%)
Similarity:55/148 - (37%) Gaps:46/148 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   360 LQDAHTWYIKMADRRPAWQ-ALVGIFEAYTWIGFILILIISWLFWFTLVMILPEPKYYQQLSLTA 423
            :::::.:.|::   ||..| ||||:.|.|.|..|:                      |...|.:.
Zfish   114 MENSNQFVIQL---RPELQDALVGVIEHYRWSKFV----------------------YMYSSDSG 153

  Fly   424 INALAVTISIAVQERPICETTRLFFMALTLYGLNVVATYTSKMIATFQD-----PGYL---HQLD 480
            ::.|...:..|.:...:            :..:||.....:..:..|||     .|.:   .:|:
Zfish   154 LSVLQKVLDTAAEHNWL------------VTSVNVETMTEASFLKVFQDLDKKKEGQIIIDCELE 206

  Fly   481 ELTEVVAAGIPFGGHEES 498
            .||.::...|..|.:.:|
Zfish   207 RLTSILKKIIELGKNVKS 224

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir60aNP_611901.1 None
gria1aNP_991161.1 Periplasmic_Binding_Protein_type1 26..390 CDD:471960 28/148 (19%)
PBP2_iGluR_AMPA_GluR1 404..806 CDD:270447
Lig_chan 536..835 CDD:459656
Blue background indicates that the domain is not in the aligned region.

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