DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir60a and Grid2

DIOPT Version :9

Sequence 1:NP_611901.1 Gene:Ir60a / 37881 FlyBaseID:FBgn0034994 Length:716 Species:Drosophila melanogaster
Sequence 2:NP_077355.2 Gene:Grid2 / 79220 RGDID:68368 Length:1007 Species:Rattus norvegicus


Alignment Length:547 Identity:103/547 - (18%)
Similarity:200/547 - (36%) Gaps:139/547 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   212 NSTMNYNLLVNDYYSNVNCRILNVQSVGQCHDGKLYPNNAVVKASMQDYVSGFSPRNCTFFACSS 276
            |..:::.:|..:|...:.   ..|:.:| |.:.....|.::....:::.:.|...|..|.     
  Rat   393 NPNVHFEILGTNYGEELG---RGVRKLG-CWNPVTGLNGSLTDKKLENNMRGVVLRVVTV----- 448

  Fly   277 ISAPFV-EADCILGLEMRILGF-------MKNRLKFDVNQTCSLESR-GEMDGPANWTGLLGKVQ 332
            :..||| .::.:||...:..||       :.|.|.|:.....:.:.: |.......|.||:|::.
  Rat   449 LEEPFVMVSENVLGKPKKYQGFSIDVLDALSNYLGFNYEIYVAPDHKYGSPQEDGTWNGLVGELV 513

  Fly   333 NNECDFVFGG--YYPDNEVADHFWGSDTYLQDAHTWYIKMADRRPAWQALVGIFEAYTW------ 389
            ....|.....  ..||.|....|  :..|:..:....::.|::.....|.:..|:...|      
  Rat   514 FKRADIGISALTITPDRENVVDF--TTRYMDYSVGVLLRRAEKTVDMFACLAPFDLSLWACIAGT 576

  Fly   390 ---IGFILILIISWLFWFTLVMILPEPKYYQQLSLTA---INALAVTISIAVQ---ERPICE-TT 444
               :| :|:.:::||          .|...|..|:|:   .|::.......||   |.|... .|
  Rat   577 VLLVG-LLVYLLNWL----------NPPRLQMGSMTSTTLYNSMWFVYGSFVQQGGEVPYTTLAT 630

  Fly   445 RLFFMALTLYGLNVVATYTSKMIATF---QDPGYLHQLDELTEVVAAGIPFGGHEESRDW----- 501
            |:...|..|:.|.|:::||:.:.|..   :....:..|.:|::  ...||:|...:|..:     
  Rat   631 RMMMGAWWLFALIVISSYTANLAAFLTITRIESSIQSLQDLSK--QTDIPYGTVLDSAVYQHVRM 693

  Fly   502 -----FEND---DDMW-IFNGYNISPEFIPQSK-NLEAVKWGQRCILSN--------------RM 542
                 ||.|   ..|| :.|..|.|...:.:|: .::.||:|....:.:              ..
  Rat   694 KGLNPFERDSMYSQMWRMINRSNGSENNVLESQAGIQKVKYGNYAFVWDAAVLEYVAINDPDCSF 758

  Fly   543 YTMQSPLADVIYAFP-------NNVFSSPVQMIMKAGFPFLFEMNSIIRLMR--------DVGIF 592
            ||:.:.:||..|...       .:|||..:..:.::|     :|:    :::        ...::
  Rat   759 YTVGNTVADRGYGIALQHGSPYRDVFSQRILELQQSG-----DMD----ILKHKWWPKNGQCDLY 814

  Fly   593 QKIDADFRYNNTYLNRINKMRPQFPETAIVLTTEHLKGPFFILVVG---SCWAALTFIGELIIHR 654
            ..:||                   .:....|..:.|.|.|.||..|   ||..|       ::..
  Rat   815 SSVDA-------------------KQKGGALDIKSLAGVFCILAAGIVLSCLIA-------VLET 853

  Fly   655 WRTQLVST---SEQQDRRSDKRRRRRR 678
            |.::...:   |::.|:..|.....||
  Rat   854 WWSRRKGSRVPSKEDDKEIDLEHLHRR 880

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir60aNP_611901.1 None
Grid2NP_077355.2 Interaction with CBLN1 homotrimer. /evidence=ECO:0000250|UniProtKB:O43424 24..345
Periplasmic_Binding_Protein_type1 28..429 CDD:415822 7/39 (18%)
PBP2_iGluR_delta_2 440..806 CDD:270449 78/394 (20%)
Interaction with AP4M1. /evidence=ECO:0000269|PubMed:14572453 921..991
PDZ-binding. /evidence=ECO:0000250 1005..1007
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166349989
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.740

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