DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir60a and grin2aa

DIOPT Version :10

Sequence 1:NP_611901.1 Gene:Ir60a / 37881 FlyBaseID:FBgn0034994 Length:716 Species:Drosophila melanogaster
Sequence 2:XP_021329529.1 Gene:grin2aa / 563297 ZFINID:ZDB-GENE-070424-129 Length:1460 Species:Danio rerio


Alignment Length:438 Identity:72/438 - (16%)
Similarity:160/438 - (36%) Gaps:103/438 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   286 CILGLEMRILGFMKNRLKFDVNQTCSLESRGEMDGPAN--WTGLLGKVQNNECDFVFGGYYPDNE 348
            |..|..:.||..:...:||..:  ..|.:.|:.....|  |.|::|:|.|.:.....|....:.|
Zfish   452 CCKGFCIDILKKIARNVKFTYD--LYLVTNGKHGKKINNVWNGMVGEVVNKKAVMAVGSLTINEE 514

  Fly   349 VADHFWGSDTYLQDAHTWYIKMADRRPAWQALVGIFEAYTWI-GFILILIISWLFWFTLVMILP- 411
            .::....|..:::...:..:..::...:..|.:..|.|..|: .|:::|:::.:..|....|.| 
Zfish   515 RSEVIDFSVPFVETGISVMVSRSNGTVSPSAFLEPFSASVWVMMFVMLLLVTAMAVFMFEYISPL 579

  Fly   412 -------------EPKYYQQLSLTAINALAVTISIAVQERPICETTRLFFMALTLYGLNVVATYT 463
                         .|.:....::..:..|....|:.|| .|...|::........:.:..:|:||
Zfish   580 GFNRNLAQGKDPHGPSFTMGKAVWLLWGLVFNNSVPVQ-NPKGTTSKFIVSVWAFFAVIFLASYT 643

  Fly   464 SKMIATFQDPGYLHQLDELTEVVAAGIPFGGHEESRDWFENDDDMWIFNGYNISPEF----IPQ- 523
            :.:.|......::.|:..|:                       |....:.|:.||.|    :|. 
Zfish   644 ANLAAFMIQEEFVDQVTGLS-----------------------DKKFQSPYSYSPPFRFGTVPNG 685

  Fly   524 --SKNLE---------AVKWGQRCILSNRMYTMQSPLADVIYAFPNNVFSSPVQMIMKA------ 571
              .:|:.         .||:.|..: ::.:.::::...|   ||   ::.:.|...|..      
Zfish   686 STERNIRKNYPDMHQYMVKYHQTGV-NDALVSLKTGKLD---AF---IYDAAVLNYMAGRDEGCK 743

  Fly   572 ----GFPFLFEMN------------------SIIRLMRDVGIFQKIDADFRYNNTYLNRINKMRP 614
                |..::|...                  :|:.::.| |..::::|.:.....:..:...|..
Zfish   744 LVTIGSGYIFATTGYGIALQKGSLWKRPVDLAILAIIGD-GEMEELEAQWLTGICHNEKNEVMSS 807

  Fly   615 QFPETAIVLTTEHLKGPFFILVVGSCWAALTFIGELIIHRWRTQLVST 662
            |       |..:::.|.|::|......:.:||:.|.:.: ||.:...|
Zfish   808 Q-------LDVDNMAGVFYMLATAMGLSLITFVWEHLFY-WRLRYCFT 847

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir60aNP_611901.1 None
grin2aaXP_021329529.1 PBP1_iGluR_NMDA_NR2 33..384 CDD:380601
PBP2_iGluR_NMDA_Nr2 400..799 CDD:270436 60/380 (16%)
NMDAR2_C 836..1460 CDD:463148 3/13 (23%)
Blue background indicates that the domain is not in the aligned region.

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