DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir60a and grik2

DIOPT Version :9

Sequence 1:NP_611901.1 Gene:Ir60a / 37881 FlyBaseID:FBgn0034994 Length:716 Species:Drosophila melanogaster
Sequence 2:XP_021322472.1 Gene:grik2 / 556013 ZFINID:ZDB-GENE-080414-1 Length:908 Species:Danio rerio


Alignment Length:686 Identity:119/686 - (17%)
Similarity:238/686 - (34%) Gaps:175/686 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    86 LSSPADQIQEGFSKLINEAVTNPGPPDREELFQMRVASDYNITNGTEDKGELILADNYVIVVDSV 150
            |::...|:.....|...|.:..|..||.            .:.:|.......::.|...:|..:|
Zfish   282 LNTENSQVSSIIEKWSMERLQAPPKPDS------------GLLDGFMTTDAALMYDAVHVVAVAV 334

  Fly   151 DRLKELMKKKIV--EMRSWNPGARFLVLFHNATCRNRPLGVASNIFKDLMEMFYVHRVALLYANS 213
            .:..::....:.  ..:.|..|.||:.|...|                       |...|   ..
Zfish   335 QQSPQITVSSLQCNRHKPWRFGNRFMTLIKEA-----------------------HWDGL---TG 373

  Fly   214 TMNYNLLVNDYYSNVNCRILNVQSVGQCHDGKLYP--------NNAVVKASMQDYVSGFSPRNCT 270
            .:|:| ..|...::.:..:::::..|....|...|        |.....|::.|.:|     |.:
Zfish   374 RINFN-RTNGLRTDFDLDVISLKEEGLEKIGTWDPASGLNMTENQKGKTANVTDSLS-----NRS 432

  Fly   271 FFACSSISAPFV---------------EADCI-LGLEM-RILGF-MKNRLKFDVNQTCSLESRGE 317
            ....:.:..|:|               |..|: |..|: .|||| .:.||..|.......||.|:
Zfish   433 LVVSTILEEPYVMFKKSDKPLYGNDRFEGYCVDLLRELAAILGFGYELRLVEDGRYGAQDESSGQ 497

  Fly   318 MDGPANWTGLLGKVQNNECDFVFGGY---YPDNEVADHFWGSDTYLQDAHTWYIKMADRRP---- 375
                  |.|::.::.:::.|......   |...:|.|       :.:...|..|.:..|:|    
Zfish   498 ------WNGMVRELMDHKADLAVAPLAITYVREKVID-------FSKPFMTLGISILYRKPNGTN 549

  Fly   376 -------------AWQALVGIFEAYTWIGFILILI--ISWLFWFTLVMILPEPKYYQQLSLTAIN 425
                         .|   :.|..||..:..:|.:|  .|...|:......|:....:. :.|.:|
Zfish   550 PGVFSFLNPLSPDIW---MYILLAYLGVSCVLFVIARFSPYEWYNPHPCNPDSDVVEN-NFTLLN 610

  Fly   426 ALAVTISIAVQE----RPICETTRLFFMALTLYGLNVVATYTSKMIA-----TFQDPGYLHQLDE 481
            :....:...:|:    .|...:||:.......:.|.::::||:.:.|     ..:.|  :...|:
Zfish   611 SFWFGVGALMQQGSELMPKALSTRIVGGIWWFFTLIIISSYTANLAAFLTVERMESP--IDSADD 673

  Fly   482 LTEVVAAGIPFGGHEE--SRDWFEND-----DDMWIFNGYNISPEFIPQSKN---LEAVKWG-QR 535
            |.:  ...|.:|..|:  :..:|:..     |.||         ||:...::   :::::.| :|
Zfish   674 LAK--QTKIEYGVVEDGSTMTFFKKTKISTYDKMW---------EFMSSRRHSVMVKSIEEGIER 727

  Fly   536 CILSNRMYTMQSPLADVIYAFPNNVFSSPVQMIMKA-------GFPFLFEMNSIIRLMRDVGIFQ 593
            .:.|:..:.|:|...:.:.....|:......:..||       |.|:..::...|..:::.|...
Zfish   728 VLTSDYAFLMESTTIEFVTQRNCNLTQIGGLIDSKAYGVGTPMGSPYRDKITIAILQLQEEGKLH 792

  Fly   594 KIDADFRYNNTYLNRINKMRPQFPETAIVLTTEHLKGPFFILVVGSCWAALTFIGELIIHRWRTQ 658
            .:...:...|......||       .|..|..:::.|.|.:|..|...:....:||.:...    
Zfish   793 MMKEKWWRGNGCPEEENK-------EASALGVQNIGGIFIVLAAGLVLSVFVAVGEFLYKS---- 846

  Fly   659 LVSTSEQQDRRS------DKRR-----RRRRRRKPE 683
              ..:.|.::||      |:.|     :||.:.||:
Zfish   847 --KQNAQLEKRSFCSAMVDELRVSLKCQRRLKHKPQ 880

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir60aNP_611901.1 None
grik2XP_021322472.1 PBP1_iGluR_Kainate 37..414 CDD:380605 25/170 (15%)
Periplasmic_Binding_Protein_Type_2 430..800 CDD:419667 70/399 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591637
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.930

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